<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08953

Description Uncharacterized protein
SequenceMDIETLTDIVFVVEGSAANGAYINELKTNYIVPTLENFSQGPIDDREYLVSDRHSTQYGIVFYRTAANLLETTCCTFGPFTSPQKVVEIFERLPLVGGGMESCANLAEGFATAHVCFEDMKETRAPFIEGSMALQKHCVLVCNSPPYSIPVTECWKFAGKTVEQLATLFHERKIYLSIIAPRKMPVLYKLYMKADGDQPLTAKNYAKNIRHLVLLKGYHLKERPQSPNGIMGTNQALQMSGAQQHPNAQQTGQNAGIVMDGNHASSQQQQQQQSAQVGGMNPNQQPGNPLSQQMLQQQQFSAQNSQNPMQNPNFQPQGNRWIFATNQQQTQNRPQFIGGSNSGVVGSMVNAQGLAGQNPNSALISQLSAPPNQNINPMLQQQQQIRMQMLNQQQQLQQLQQGNMHSGSGTSNQIPTSAPNQANTSVPVQQHQPGTSSDQTVMREKIWSGTLEWVEKLKTDQPKITRSIQCTVTSSIKDGEPEIKAINWPPKMFMQLMPKQLVGNIGGGYFKESKTVVFKPQPCEASESLAKNMTQLFAGCVHFTTPTNMPTCDIKVLILLYTAEKNAFLGFIPNNQAMFVERLRKVIQQKQSMGMQQSAVTGNIQQQQQQQQIQNAMTAQVQNPLPSNVLNAQQQQQDPQQQQQQHYNQYATSQQQMNMQIGGPIGPNPQLGAGDQVGTGNPIQQQQIAMMQHQRGAMMGTGPNNPQQQIPPQHALQQQQQRMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMSAVGGQGVSIGPGMGPNQIGSGPGGSGGPNRPFEENFEMY
Length792
PositionUnknown
OrganismGlossina austeni (Savannah tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.06
Grand average of hydropathy-0.623
Instability index51.04
Isoelectric point8.72
Molecular weight87445.93
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08953
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     248.74|      25|      25|     260|     284|       1
---------------------------------------------------------------------------
  260-  284 (47.66/16.26)	DGNHASSQQQ....QQQQ.SAQV..GGMNPNQ
  286-  310 (39.34/11.90)	PGNPLSQQML....QQQQfSAQ...NSQNPMQ
  370-  394 (37.25/10.81)	PPNQNINPML....QQQQ.QIRM..QMLNQQQ
  602-  620 (28.78/ 6.38)	.GN.I..QQQ....QQQQ.QIQN..A.MTA.Q
  621-  641 (30.35/ 7.20)	VQNPLPSNVL....NAQQ.Q.Q.....QDPQQ
  679-  705 (32.68/ 8.42)	TGNP.IQQQQiammQHQR.GAMM..GT.GPNN
  706-  732 (32.69/ 8.43)	PQQQIPPQHA....LQQQ.QQRMvrPMMSNNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.69|      24|     100|     642|     674|       2
---------------------------------------------------------------------------
  642-  669 (39.88/16.06)	QQQQHYNQYatsQQQMNmQIGG...PIGP..NP
  740-  768 (37.81/ 7.45)	QQSTPGQQF...RPQMS.AVGGqgvSIGPgmGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.64|      26|      91|     223|     258|       3
---------------------------------------------------------------------------
  223-  250 (46.13/20.58)	RPQSPNGIMGTNQalQMSGAQ....QHPNAQQ
  315-  335 (43.08/13.98)	QPQGNRWIFATNQ.......Q....QTQNRPQ
  347-  363 ( 7.44/ 8.10)	...............SMVNAQglagQNPNSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.74|      26|      27|     424|     449|       4
---------------------------------------------------------------------------
  397-  428 (35.42/18.74)	QQLQQGnmhsgsGTSNQIPTSAPNQANTSVPV
  429-  454 (47.32/27.75)	QQHQPG......TSSDQTVMREKIWSGTLEWV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.56|       9|      27|     182|     191|       5
---------------------------------------------------------------------------
  182-  191 (12.73/14.90)	RKMpVLYKLY
  210-  218 (16.83/11.62)	RHL.VLLKGY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08953 with Med25 domain of Kingdom Metazoa
Unable to open file!