<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08947

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPRGATWDILNLAEALLEQAMIGPSPNPLILSYLKWYPTPPCSQLSFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLQEGLEAGTPATGEKQLALCLQCLEKTLSSTKNRALLHIAKLEEASSWTAIEHCLLKLGEILANLSNPQLRSQAEQCGTLIRSIPSMLSVHSEQLHKTGFPTIHALILLEGTMNLTGEMQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTQELKWTAFTYLKIPQVLVKLKKYFHGEKDFTEDVNSAFEFLLKLTPLLDKADQRCNCDCTNFLLQECNKQGLLSEVNFAILLKSSENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGSGESTKTASVRALLFDISFLMLCHVAQTYGSEVILSEASSGEEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMNSILEHMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHILDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVQLLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPVEDMQPSKLMRLLSSNEDDANILSSPTDRSMNSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQDSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length968
PositionTail
OrganismNeotoma lepida (Desert woodrat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Myomorpha> Muroidea> Cricetidae> Neotominae> Neotoma.
Aromaticity0.07
Grand average of hydropathy0.029
Instability index47.02
Isoelectric point6.14
Molecular weight108189.78
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08947
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.92|      47|     182|     683|     736|       1
---------------------------------------------------------------------------
  683-  736 (73.24/62.75)	KRPIKEVLTDIFakVLEKGWVDSRSIHIldtllHMGGVYWFCNNLIKELLKETR
  873-  919 (83.68/54.14)	RDPLNRVLANLF..LLISSILGSRTAGP.....HTQFVQWFMEECVDCLEQDSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.26|      61|     119|     615|     680|       2
---------------------------------------------------------------------------
  615-  680 (92.86/70.37)	REKSLQMIrQLagpLYSENTLQFYNERVVIMNSILEHMCADVlQQTATQIKFPSTGVDTMPYWNLL
  737-  797 (106.40/63.58)	KEHTLRAV.QL...LYSIFCLDMQQVTLVLLGHILPGLLTDS.SKWHSLMDPPGTALAKLAVWCAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     570.18|     190|     247|      58|     293|       3
---------------------------------------------------------------------------
   58-  293 (278.25/263.38)	PLILSYLKWY..PTPpcsqlsfdDFSRD........LCVQALLDIMDMFCDrLSCHG.KAEECIGlcRALLSALHW..LLRctAASAERLQEglEAGtpatgekqlaLCLQclektlsstKNRALLHIAKLEEASSWTAIEHCLLKLGEILANLSNPQLRSQAEQCGTLIRSIPSMLSVHSEQLHKTGFPT....IHAL....................ILLEGTmnlTGEMQPLVEQLMMVkrmqHIPTPLFVLEIWKACFvglieSPEGTQ
  306-  532 (291.93/178.70)	PQVLVKLKKYfhGEK........DFTEDvnsafeflLKLTPLLDKADQRCN.CDCTNfLLQECNK..QGLLSEVNFaiLLK..SSENANIQP..NPG..........LILR.........AEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGSGESTktasVRALlfdisflmlchvaqtygsevILSEAS...SGEEVPFFETWMQT....CMPEEGKILNPDHPCF.....RPDSTK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08947 with Med24 domain of Kingdom Metazoa
Unable to open file!