<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08907

Description Luminal-binding protein 5
SequenceMDRSMGARGSVILLGLVIAGSLFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDNERLIGEAAKNQAAVNAERTVFDVKRLIGRKFADKEVQKDRTLVPYKIINKDGKPYIEVKIKDGEVKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDHRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSNQHQVRVEIESLYEGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKHQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGRSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNQLETYVYNMKNTVNDKDKLADKLESEEKEKVEEALKEALEWLDDNQNAEKEDYEEKLKEVEAVCNPIISAVYQRSGGAPGGTAGDDDDDDNDDSHDEL
Length670
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-0.489
Instability index27.42
Isoelectric point5.03
Molecular weight73972.74
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08907
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.71|      21|      21|     589|     609|       1
---------------------------------------------------------------------------
  589-  609 (32.79/17.82)	DKLADKLESEEKEKVEEALKE
  611-  631 (36.92/20.86)	LEWLDDNQNAEKEDYEEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.54|      20|      21|      78|      98|       2
---------------------------------------------------------------------------
   78-   98 (28.72/26.33)	DNERLIGEAAKNQaAVNAERT
  101-  120 (33.82/25.53)	DVKRLIGRKFADK.EVQKDRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.70|      54|     193|     161|     231|       3
---------------------------------------------------------------------------
  161-  217 (77.66/51.77)	KETAEAFLGKKikDAVVTVPAYFNDAQRQATKDAGTIAGLNVARIINEPTaAAIAYG
  379-  404 (30.96/10.15)	...........................QQLLKD..YFDGKEPNKGVN.PD.EAVAYG
  454-  500 (70.08/47.02)	TKKSQVFTTYQ..DQQTTVSIQVFEGERSMTKDCRLLGKFDLSGIPPAP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.81|      15|      21|     416|     430|       4
---------------------------------------------------------------------------
  416-  430 (26.02/18.42)	GGEETKDILLLDVAP
  439-  453 (27.79/20.20)	GGVMTKLIPRNTVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.26|      28|     193|      42|      69|       5
---------------------------------------------------------------------------
   42-   69 (51.98/36.03)	DL.GTTYSCV......GVYK....NGHVEIIANDQGNRI
  231-  269 (36.27/22.81)	DLgGGTFDVSiltidnGVFEvlatNGDTHLGGEDFDHRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.48|      11|      18|     538|     548|       6
---------------------------------------------------------------------------
  538-  548 (18.02/10.41)	EKGRLSQEEID
  559-  569 (17.46/ 9.87)	EEDKKVKEKID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.80|      12|      16|     313|     325|       8
---------------------------------------------------------------------------
  313-  325 (16.41/15.47)	RVEIESLYEGLdF
  331-  342 (21.38/14.01)	RARFEELNNDL.F
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08907 with Med37 domain of Kingdom Viridiplantae
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