<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08906

Description Putative U-box domain-containing protein 53
SequenceMWRGAGGAVQAKGANCGKDQQQQQQLVAVAIDADKSSQHALKWAADHVLSRGQIFFLLHVRRKITSIPTPTGSQLSITEVEDEVASVFLEQLDMQTKELLLPFQCFCNRRGLQCKEVILDETDVSKAIVDFVMHQGIDKLILGASSRNAFTRTFKQVDVPTAVSKMTPDFCSVYVISKGKISSARPASRPNKNQANRKPIDFEVDGNPFQSAKSDPAASNHNVPPAGSALVRSGRVGYADHNGSSERTNDVRVSRFNQVQGHLDYSHSISSCPSPSRTSFDRPGNFYRREFRDTGRQQSPLSNMSNEHSYREAPLRIPDLNGSGGAYWSNGSGSSGYDGSSLIPMEEVSISWSNHSLEDVEAELRRLKLELKQKGGIMTDETSNEAYQEKPDGELNRGKETRHHMAEMERTSQAILDPVRNPLQEAAEKRKALGLSSDIRYRRYTIEEIKKATENFSDALKIGEGGYGPVYKSTLDHTLVAIKILRSDVTQGMKQFQQEVEVLSCIRHPNMVLLMGACPEYGCLVYEYMANGSLEDRLLCRLGTAPLSWQLRFKIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNFVSKIADVGLARLVPQTANGADVVTQYCMTGAAGTFCYIDPEYQKTGMVSVKSDIYALGIIFLQLITGRPPMGLAHNVNNVLEEGRLHEMLDPKEPEWPMEETKRFAELALKCAELRRRDRPDLASVVLPELNRLRAFAASTEDSAWNYLCQRSRSHKELIRAPAMELSEFLDNDNIAKGSSFVI
Length774
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.07
Grand average of hydropathy-0.444
Instability index42.10
Isoelectric point6.72
Molecular weight86161.64
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08906
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.18|      10|      38|     122|     131|       2
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  122-  131 (17.84/11.36)	TDVSKAIVDF
  161-  170 (19.34/12.87)	TAVSKMTPDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.96|      23|     354|      31|      53|       3
---------------------------------------------------------------------------
   31-   53 (40.36/26.04)	IDADKSSQHALKWAADHVLSRGQ
  377-  399 (40.60/26.24)	IMTDETSNEAYQEKPDGELNRGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.25|      15|      25|     183|     199|       4
---------------------------------------------------------------------------
  183-  199 (22.52/18.97)	SARpaSRPNKNQANRKP
  211-  225 (27.73/15.90)	SAK..SDPAASNHNVPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.63|      23|      24|     295|     318|       7
---------------------------------------------------------------------------
  295-  318 (38.77/24.86)	GRQQSPLSNMSNEHSYREAPLrIP
  322-  344 (43.86/24.04)	GSGGAYWSNGSGSSGYDGSSL.IP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08906 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARPASRPNKNQANRKPIDFEVDGNPFQSAKSDPAASNHNVPPAGSALVRSGRVGYADHNGSSERTNDVRVSRFNQV
2) DYSHSISSCPSPSRTSFDRPGNFYRREFRDTGRQQSPLSNMSNEHSYREAPLRI
3) LKQKGGIMTDETSNEAYQEKPDGELNRGKETRHHMAEMERTSQAILDPVRN
184
264
371
259
317
421










Molecular Recognition Features






MoRF SequenceStartStop




NANANA