<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08905

Description Pre-mRNA-processing protein 40A
SequenceMANNLQSSGQQLPRPPVIGSTGLPQNFGPPTAMQFRPMVPTQQAHQFIPPASQQFMPAGQSIPGQAQMPHFPQPTQHLPQPGQGPPSSQAIPMPYVHPNRPMPTGPLQTQQVAQVPNGHLPNVGGPMPLSSSYTFATSYGQPQNTVNAPLQYQPVSGTPTIGQPWAAPGAQSVPLVTPLVSSVQPSSAPPAAAPKMDSQPSSSEPVPSDWQEHTSADGKKYYYNKKTRQSSWEKPFELMTPTERADASTVWKEFITSEGRKYYYNKVTKQSKWTIPDELKLARETAEKAANQSAGQETGAASAVSLTEIPPTLTNVQNPAAASVAASSPVAVTVNSVIPPANTTSVSPSVSGTHSTEIPSNSSLGPTNTLGISHPGPPPTTLPASGIASSEVSSITLDAATTVSRSNHDSPSLTSITNVTDGTSAQELEEAKKAMPVIGKINVTPVEEKVVDEEPMVYANKQEAKHVFKTLLESANVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRIKQKKAREDFTRMLEECKELTSSLRWSKAVTMFEDDERFSAVERARDREDLYESYMVELQKKERAKAAEEHKRNIMEYRAFLESCDFIKANTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHDLEKEEVEQRKIQKEQIRRLERKNRDEFRKLMEGHIATGVLTAKTHWRDYCMQVKDSAPYLAVSSNTSGSTPKDLFEDVAEELDKQYDEDKAQVKEAMKVGKIVLASSWTFENFKSAISEEGTLKGKGISDINLKLVFDELMERLREKEEKEAKKRQRLGDNFSDLLYSIKEVTASSKWDDCKSLFEDSQEYRAIGDEAFAKEIFEEYIAQLQEKLKEKERLREEEKAKKEREKEEKVKKKEKERKEKERERDKEKGKDRSKRDETESETADLDSHGSKDRKREKDRERKYRKRHHNAPDDGSSEKDEKEDSKKSRRHSSDHKKSRKHAYASDSDSENRHKRHKKDRDGSRRNGAHEELEDGELGEDGEIR
Length1020
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-1.040
Instability index53.16
Isoelectric point6.44
Molecular weight115299.18
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08905
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     114.38|      19|      19|     878|     896|       1
---------------------------------------------------------------------------
  864-  885 (23.65/ 9.89)	KLKEKERL..REEekaKKEREKEE
  886-  902 (26.37/11.92)	KVKKKEKE..RKE....KERER.D
  903-  921 (25.90/11.57)	KEKGKDRS..KRD...ETESETAD
  958-  972 (18.58/ 6.10)	K....EDS..KKS...RRHSSDHK
  990- 1012 (19.88/ 7.07)	KRHKKDRDgsRRN.gaHEELEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.32|      18|      19|      72|      89|       2
---------------------------------------------------------------------------
   72-   89 (40.62/17.71)	PQPTQHL..PQPGQGPPSSQ
   92-  110 (26.13/ 9.02)	PMPYVHPnrPMP.TGPLQTQ
  176-  193 (24.57/ 8.09)	VTPLVSS..VQPSSAPPAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.10|      17|      19|     380|     396|       3
---------------------------------------------------------------------------
  343-  362 (18.43/ 7.46)	TTSvsPSvSGTHSTEIPSNS
  380-  396 (28.01/15.14)	TTL..PA.SGIASSEVSSIT
  401-  417 (26.66/14.06)	TTV..SR.SNHDSPSLTSIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     134.65|      26|      32|     621|     646|       4
---------------------------------------------------------------------------
  514-  537 (30.39/17.47)	GQRKKQEAEER..RIKQK.KAREDFTR
  553-  579 (30.31/17.40)	KAVTMFEDDERFSAVERArDREDLYES
  621-  646 (40.62/26.15)	KVQDRLEDDERCSRLEKI.DRLEIFQE
  655-  679 (33.33/19.97)	EVEQRKIQKEQIRRLERK.NRDE.FRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.79|      22|      32|     275|     305|       5
---------------------------------------------------------------------------
  271-  294 (32.58/39.54)	SKWT...IPDELKLARETAekAANQSA
  302-  326 (31.21/13.44)	SAVSlteIPPTLTNVQNPA..AASVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.30|      17|      19|      21|      37|       6
---------------------------------------------------------------------------
   14-   35 (29.19/13.31)	RPpvigsTGLPQNFGPPTAMQF
   36-   55 (26.95/11.76)	RP..mvpTQQAHQFIPPASQQF
  134-  152 (20.16/ 7.08)	TF..atsYGQPQNTV.NAPLQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     117.41|      30|     108|     716|     745|       7
---------------------------------------------------------------------------
  716-  745 (47.59/32.18)	T...................SGSTPKDLFEDVAE.......ELDKQ.YDEDKAQVKE
  759-  806 (29.09/16.42)	TfenfksaiseegtlkgkgiSDINLKLVFDELME.......RL.RE.KEEKEAKKRQ
  807-  830 (21.32/ 9.80)	R...................LGDNFSDLLYSIKE......vTASSK.WDD.......
  832-  863 (19.41/ 8.17)	.........................KSLFEDSQEyraigdeAFAKEiFEEYIAQLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.85|      20|      38|     210|     229|       8
---------------------------------------------------------------------------
  210-  229 (40.46/23.20)	WQEHTSADGKKYYYNKKTRQ
  251-  270 (38.38/21.66)	WKEFITSEGRKYYYNKVTKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.29|      14|      30|     941|     954|       9
---------------------------------------------------------------------------
  941-  954 (26.25/17.10)	RKRHHNAPDDGSSE
  973-  986 (24.04/14.96)	KSRKHAYASDSDSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      11|      35|     116|     126|      13
---------------------------------------------------------------------------
  116-  126 (23.00/12.28)	PNGHLPNVGGP
  154-  164 (21.65/11.17)	PVSGTPTIGQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08905 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVTVNSVIPPANTTSVSPSVSGTHSTEIPSNSSLGPTNTLGISHPGPPPTTLPASGIASSE
2) ITLDAATTVSRSNHDSPSLTSITNVTDGTSAQELEEAKKAMPVIG
3) KERLREEEKAKKEREKEEKVKKKEKERKEKERERDKEKGKDRSKRDETESETADLDSHGSKDRKREKDRERKYRKRHHNAPDDGSSEKDEKEDSKKSRRHSSDHKKSRKHAYASDSDSENRHKRHKKDRDGSRRNGAHEELEDGELGEDGEIR
4) MANNLQSSGQQLPRPPVIGSTGLPQNFGPPTAMQFRPMVPTQQAHQFIPPASQQFMPAGQSIPGQAQMPHFPQPTQHLPQPGQGPPSSQAIPMPYVHPNRPMPTGPLQTQQVAQVPNGHLPNVGGPMPLSSSYTFATSYGQPQNTVNAPLQYQPVSGTPTIGQPWAAPGAQSVPLVTPLVSSVQPSSAPPAAAPKMDSQPSSSEPVPSDWQEHTSADGKKYYYN
5) TIPDELKLARETAEKAANQSAGQETGAASAVSLTEIPPTLTNVQNPAAASVAA
331
395
868
1
274
391
439
1020
224
326










Molecular Recognition Features






MoRF SequenceStartStop




1) HEELEDGELGEDGEIR
2) HKKSRKHAYA
3) RERKYRKRHHNAP
4) RHKRHKKDRD
1005
971
936
988
1020
980
948
997