<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08900

Description Mediator of RNA polymerase II transcription subunit 25
SequenceMPQNATRTTHSPLPLYIYMYVHTSLSLSLSLTLYIYSSEEERGVEREEGGEEEEERRRRRAMAERQLIVVVEGTAALGPYWSTILSDYLEKIIRSFSANELNGQKISGAGPEFAMVIFNTHGALSAFTVQRSGWTKDPDVFLRWLSGIPFIGGGFNDTATAEGLADALVMFPLPPNPSQQNHEMQKHCILVAASNPYPLPTPVYRPPPPHSENAEAPTESWLADAETTAKSFGQWSISLSVIAPKQLPKLKAIYNAGKRNPRAAEPAVDHAKNPHFLVLLSENFMEARVALTRPPNVSNVKVDGASAAPAASVAPTSSNISVNGSIMSRQALAGGNMPTATVKVEPTTIPSLVPGPTFSHLPAISNVTSQGIPTLQSSSPSPISQEMNAINDNVQEHKPLVNPVSQQLRPVGPAAANVNILNNLSQHRQMMNSTSLAGASSIGLPMHMSSMISSGMTSAAMSGISSLPGVTQNTNLGSFTSATSNMSSNSNIGIAPSLANLQGNISMGQSLSNVAQASLASGGQIGQSGIGMNQNIMSGLGTTGISSGTGPGTMIPTPGMSQQAGVHSLGMTGNSSINMPMTQHPNVQQSQSKYVKIWEGTLSGQRQNQPVFICKLEGYRSASAADTLASDWPSTMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPTQTLLLSVSDKAGRLIGMLFPGVCC
Length710
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.05
Grand average of hydropathy-0.173
Instability index51.08
Isoelectric point7.74
Molecular weight75576.99
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.90|      23|      23|     431|     453|       1
---------------------------------------------------------------------------
  359-  384 (24.16/ 7.66)	SHLPAISNVTSQ.GIPT..LQSSSpspIS
  431-  453 (39.99/17.11)	MNSTSLAGASSI.GLPM..HMSSM...IS
  456-  481 (22.74/ 6.81)	MTSAAMSGISSLpGVTQntNLGSF...TS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.85|      36|      81|     223|     266|       2
---------------------------------------------------------------------------
  223-  266 (55.12/42.37)	ADAETTAKSFGQWSISLSVIAPKQLpklkaiynAGKRNPRA...AEP
  308-  346 (56.73/29.29)	APAASVAPTSSNISVNGSIMSRQAL........AGGNMPTAtvkVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.01|      27|      28|     521|     547|       3
---------------------------------------------------------------------------
  490-  516 (39.23/18.90)	SNIGIAPSLANLQGN..ISMGQSLSNVAQ
  521-  547 (48.29/24.94)	SGGQIGQSGIGMNQN..IMSGLGTTGISS
  551-  576 (38.49/18.41)	PGTMIPTP..GMSQQagVHS.LGMTGNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.00|      17|     117|     162|     178|       5
---------------------------------------------------------------------------
  162-  178 (32.19/20.38)	EGLADALVMFPLPPNPS
  282-  298 (30.81/19.17)	ENFMEARVALTRPPNVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.47|      14|      28|     386|     400|      12
---------------------------------------------------------------------------
  386-  400 (20.12/17.67)	EMNAINdNVQEHKPL
  417-  430 (24.35/15.63)	NVNILN.NLSQHRQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08900 with Med25 domain of Kingdom Viridiplantae
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