<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08892

Description Mediator of RNA polymerase II transcription subunit 32
SequenceMDSTVEALSAAYQAFVAAAAGVLEARELSGGQKTPATDAALEAFKQRWELFRVACDQAEEFVESMKQRIGSECLVDEATGAAPAAPAAAPGIPPISAVRLEQMSKAVRWLVIELQHGSGAGAATAAGAGGTAAAHPHGSAPFDARFPEDGAQ
Length152
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-0.011
Instability index53.62
Isoelectric point4.78
Molecular weight15504.16
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
cold acclimation	GO:0009631	IEA:EnsemblPlants
leaf senescence	GO:0010150	IEA:InterPro
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
response to hydrogen peroxide	GO:0042542	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08892
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.86|      27|      44|      70|      97|       1
---------------------------------------------------------------------------
   70-   97 (44.99/19.28)	GSECLVDEATGAAPAApAAAP.GIPPISA
  117-  144 (44.87/15.81)	GSGAGAATAAGAGGTA.AAHPhGSAPFDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08892 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AATAAGAGGTAAAHPHGSAPFDARFPEDGAQ
122
152










Molecular Recognition Features






MoRF SequenceStartStop




1) ISAVRLEQ
2) RWLVI
3) TAAAHPHGSAPFDARFPEDGA
95
108
131
102
112
151