<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08887

Description U-box domain-containing protein 35 (Fragment)
SequenceMHTHTDDVNRSATAASLTAVAIDRDKTSQQAVKWTVDHLLVGSQSVTLVHVTNRNALTRRYPSPISSSIVSVQMNEVVLEDVDVSKALIDYIASCNIHNLVVGASNRNALTKKFRNPDVATNVIKGAPEFCAVYVIAKGKPVTVRSAKSPAPANAAPPRQPPLPGPMQQHLPDPDDSVKTPFTRGSLRGQQAPPPLPQIQPIAPERRSFERIGEHARQPSRDRPLSVARTAPTNMLLEGIEPSYRPTRPMTSRNSSDDDLDFQGGTGFQSADFGDSLELLSNLSDSPKGSHSPVSGRDLEAEMRRLKLELKQTMDMYNNACKEAITAKQKAKELHQWKIEEARKFEEARQGEEAALALAEMEKAKARAALEAAEAAKRIAELEAQRRLTAEMKAKREMEEKMRALDALAQNDIRYRKYSIDEIEIATDYFAENLKIGEGGYGPVYRASLDHTPVAIKVLRPDAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDNGSLEDRLFRRGKTPPIPWSIRFKIAAEIATGLLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPAVANNVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGVMLLQIITAKPPMGVTHHVERAIENGTFEQMLDPTVTDWPVEEALGFAKLALKCSELRRKDRPDLGTVILPELNRLRNLGHAYEMGYSISSSTGSSMSSGSQTFSNPNQQTRSMIGE
Length737
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-0.444
Instability index45.71
Isoelectric point7.98
Molecular weight81579.00
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08887
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.07|      18|      21|     358|     378|       1
---------------------------------------------------------------------------
  352-  372 (21.25/21.33)	EEAALALAEMEkAKARaaLEA
  373-  390 (28.82/16.42)	AEAAKRIAELE.AQRR..LTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.26|      16|      52|      49|      64|       2
---------------------------------------------------------------------------
   49-   64 (30.89/21.60)	VHVTNRNALTRRYPSP
  102-  117 (29.36/20.16)	VGASNRNALTKKFRNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.47|      21|      21|     172|     192|       3
---------------------------------------------------------------------------
  150-  173 (35.56/18.59)	PAPANA..APPRQPPLP.GpmqQHLPD
  174-  194 (37.48/20.00)	PDDSVK..TPFTRGSLR.G...QQAPP
  195-  216 (20.43/ 7.48)	PLPQIQpiAPERRSFERiG...EHA..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08887 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FGDSLELLSNLSDSPKGSHSPVSGRDLEAEMRR
2) VRSAKSPAPANAAPPRQPPLPGPMQQHLPDPDDSVKTPFTRGSLRGQQAPPPLPQIQPIAPERRSFERIGEHARQPSRDRPLSVARTAPTNMLLEGIEPSYRPTRPMTSRNSSDDDLDFQGGTGF
273
144
305
268










Molecular Recognition Features






MoRF SequenceStartStop




NANANA