<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08884

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMEMGGGAAPPQGQQQPPPGAAAEAAAAPRPAAERLNAAVVQQLNLESVKTRALGLDKAISRILGDFDAYARANSSPKWQDVIGQFSMVSMELFNIVEDIKKVSKAFAVYPRNVSAENAAILPVMLSSKLLPEMEAEDNTKREQLLPEHNKLGDQLHHLRVYQELLPGQHQMQYSQSLSQHFQNRQMQSMQQNMAQNQLNQGSQLRSHLSQFTGAGNNALLNAAQASPNSQMISNISTAMQSQSFLPRMQQFGLNGGHPQRNHASQMLNDQMFGMGASNPSSMVGMQQQQQSVFGNMQTNVQNLQPGMVTLPNPTQNPNFPQQRQQNQQ
Length328
PositionHead
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.05
Grand average of hydropathy-0.626
Instability index53.14
Isoelectric point8.06
Molecular weight36081.21
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08884
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.15|      19|      19|     247|     265|       1
---------------------------------------------------------------------------
  193-  210 (22.94/ 7.16)	.MAQNQLNQGSQLRSHLSQ
  247-  265 (36.99/16.00)	RMQQFGLNGGHPQRNHASQ
  268-  286 (28.61/10.72)	NDQMFGMGASNPSSMVGMQ
  287-  301 (23.61/ 7.57)	QQQQSVF..GNMQTN..VQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.12|      23|      97|     115|     146|       2
---------------------------------------------------------------------------
   87-  110 (33.43/29.87)	MVSMELFNIVEDiKKVSKAFAVYP
  124-  146 (37.69/18.82)	MLSSKLLPEMEA.EDNTKREQLLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08884 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QYSQSLSQHFQNRQMQSMQQNMAQNQLNQGSQLRSHLSQFTGAGNNALLNAAQASPNSQMISNISTAMQS
2) SFLPRMQQFGLNGGHPQRNHASQMLNDQMFGMGASNPSSMVGMQQQQQSVFGNMQTNVQNLQPGMVTLPNPTQNPNFPQQRQQNQQ
172
243
241
328










Molecular Recognition Features






MoRF SequenceStartStop




NANANA