<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08880

Description U-box domain-containing protein 33
SequenceMEGNRSWETASNRSGRSSSASLAAAAAAAAAAEGEERVYVAVAEEIKYGKNTLLWALQNVSKDARIVIAHVHVPAQMIPFMGAKFHASKLKPQEVAAYRQLEREKMVKSLDQYLVVCSKVKVKAEKLVIEMDDVAKGLLELISLHGITKLVMGAAADKHYSKKMNTPKSKTAIAVLQKADPSCKIWFVCKGNLIYTKEAGFDAPGIAPSPFSSSSSMSSLSDRLRSLTLPQGQGSTPLSSSQGSIRQDYFTQRSRNDTLAALPAGLHPRGPDQVTLDRRLSTNSSIDPWEGISRRTSRTSSSTSDEVVSNLGPVQLAREEESEVGSVVLPSVHESEEDHFSSPRHELDDMGLDADVYDKLREALAEAENLKNEAFEESRRRRKAEKDVILALQKVKESENLYKKEAKRRKEIEESLAKEMQEIELLKNQRDEIAEQLQKANEQMLALEQQITSSDYATKDLEEKLSAARDLLHSLQAEFDNLQRERDDAVKEAEELRKKREQMSSDSHGALNSEFSLLELKQATQNFCETLKIGEGGFGSVYKGFLRNTTVAIKKLHPESLQGQSEFQQEVAVLSRVRHPNLVTLIGACSEASGLVYEYLPNGSLEDRLVCLNNTPPLTWQVRIRIIGEICSALIFLHSNKPHPVVHGDLKPSNILLDANFISKLSDFGICRLLIQSNTTTTTLYRTTNPRGTFAYMDPEFISTGQLTPRSDIYSFGIIILRLLTGKPPLGIAREVEDAVEDGNLHSMIDSTAGDWPFVQAKQLAHIGLRCAELSRRRRPDLVEEVWRVVEPLMKAASLSASPPPSGSVLDEHRIPSYFVCPIFQEIMRDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLKLPHCELIPNHALRSAIQEWLQQMQLQL
Length889
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-0.404
Instability index50.06
Isoelectric point5.99
Molecular weight98884.08
Publications
PubMed=27374615

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08880
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.08|      33|      38|     628|     663|       1
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  628-  663 (51.16/42.05)	GeICSALIflHSNKPHPVVHGDLKPSNIL..LDANFIS
  669-  703 (55.92/34.68)	G.ICRLLI..QSNTTTTTLYRTTNPRGTFayMDPEFIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.05|      29|      34|     447|     479|       2
---------------------------------------------------------------------------
  426-  444 (26.04/11.11)	LKNQ...RD....EIAEQLQKANEQM...........
  447-  478 (40.77/33.28)	LEQQitsSDYATKDLEEKLSAARDLLHS.....LQAE
  482-  514 (41.25/26.66)	LQRE...RDDAVKEAEE.LRKKREQMSSdshgaLNSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.05|      10|      26|     205|     214|       3
---------------------------------------------------------------------------
  205-  214 (19.34/10.78)	GIAPSPFSSS
  232-  241 (18.71/10.20)	GQGSTPLSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.69|      21|      28|     366|     393|       5
---------------------------------------------------------------------------
  376-  399 (27.40/25.14)	EESRRRRKAEKDVILALQkvkESE
  404-  424 (31.29/ 9.33)	KEAKRRKEIEESLAKEMQ...EIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.31|      24|     186|     544|     598|       6
---------------------------------------------------------------------------
  539-  562 (41.28/59.51)	GSVYK....GFLRNTTVAIKKLHPESLQ
  594-  621 (39.04/ 8.60)	GLVYEylpnGSLEDRLVCLNNTPPLTWQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08880 with Med32 domain of Kingdom Viridiplantae
Unable to open file!