<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08875

Description Putative mediator of RNA polymerase II transcription subunit 26c
SequenceMDPEDLRRVLRSNGVDVWTLIETAIAVAARDHGKELRSRRDAIVERLYASPEPADRCRNCEPDRVGGGEPRPVRPRGGGEERGGRGAGAPPADAKRAFPPRSPQSPEPFGGESPHEEEEEEEEEENVGRTIDAEKSKILAIKEFLEDPDQSEDSLVSLLQNLADMDITFKALKETDIGRHVNELRKHPSGEIRRIAKQLVRKWKDLVDEWVKSNSACDSSSPAIITDGDSPLQIPGKNLQQNNNQVPEFAYSPYPHNNGGVSSDTKNGPELLEPKAKALRRGEAPTKPNNHAASSSSATPAKLIKEQKESLLDDPEKLASARRRLQENYQEAQNAKKQRTIQVMDIHEIPKPKNTFVRKSGIQAKHW
Length367
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.04
Grand average of hydropathy-1.005
Instability index72.39
Isoelectric point6.02
Molecular weight40842.99
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08875
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.69|      39|      43|      49|      89|       1
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   51-   89 (75.59/34.01)	PEPADRC...RNCE.PDRVGGGEPRPVRPRGGGEERGGRGAGA
   91-  133 (57.10/20.46)	PADAKRAfppRSPQsPEPFGGESPHEEEEEEEEEENVGRTIDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.50|      73|     104|     141|     216|       2
---------------------------------------------------------------------------
  141-  216 (115.89/80.32)	IKEFLEDP.DQSEDSLVSLLQNLAD.MDITFKALKETDIGRHVNelrKHPSGEIRRIAKQLVRKWKD.LVDEWVKSNSA
  246-  321 (108.61/68.11)	VPEFAYSPyPHNNGGVSSDTKNGPElLEPKAKALRRGEAPTKPN...NHAASSSSATPAKLIKEQKEsLLDDPEKLASA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08875 with Med26 domain of Kingdom Viridiplantae
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