<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08867

Description U-box domain-containing protein 35
SequenceMGKYPEVKDGEGGTCPLVAVAIDKDKGSQNALKWAIDNLVTKGQTLVLVHVNTKCNSGKFMSDPSEHSLCSTFKFSLKKKRGQEDPAGFKQPTDPQMKELFLPFRCFCTRKDIHCKDVVLDDPDVAKAIVEFAAHAAIEKLVVGAPTKGGFVRFKNTDIASSVSKSAPDFCTVYVISKGKVSSLRNAVRAAPTVSPLRVQIQNQPSLKPEPVVTQNRLSIKSYVSSCDRSPFTRGGRGTTRKSYADLPMPDSTDISFVSSGRPSVDRCPFPPRLSSGSEGFDSSFEMVRTPHRSMDSYSTSNEFSPFSQSSTGTSWSSQAIAMELHRWKVEEEQKLEEARLAEEAALALVEREKAKAKAAIEAAEASQRIAELEAQKRIHAEMKVLKETEEKKRAQDALSHTDLRYRKYTIDEIEVATEYFAEARKIGEGGYGPVYKCYLDHTQVAIKVLRPDAAQGRSQFQQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRRGGTPPLSWPDRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNLVSKISDVGLARLVPPSVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGVMLLQILTSKPPMGLTHHIGHAIEKGKFAEILDPAVPDWPVEEAQRLAEIALRCAELRRKDRPDLATVVLPELNRLRMLAEEHMQYSSLRGSMHGSPMQSHQLPQQVQ
Length719
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.07
Grand average of hydropathy-0.393
Instability index46.30
Isoelectric point8.34
Molecular weight79871.42
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08867
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.13|      35|      57|       2|      37|       1
---------------------------------------------------------------------------
    2-   37 (56.68/39.80)	GKYPEvKDGEGGTCPLVAVAIDKDKGSQN..ALKWAID
   58-   94 (57.44/35.95)	GKFMS.DPSEHSLCSTFKFSLKKKRGQEDpaGFKQPTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.77|      24|      36|     209|     232|       2
---------------------------------------------------------------------------
  209-  232 (45.14/25.02)	PEPVVTQNRLSIKSYVSSCDRSPF
  248-  270 (42.13/22.91)	PMPDSTDISF.VSSGRPSVDRCPF
  285-  307 (42.50/23.17)	FEMVRTPHR.SMDSYSTSNEFSPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.41|      11|      28|     406|     417|       3
---------------------------------------------------------------------------
  406-  417 (15.42/16.45)	YRKYtIDEIEVA
  436-  446 (21.99/16.99)	YKCY.LDHTQVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.09|      17|      28|     148|     164|       6
---------------------------------------------------------------------------
  148-  164 (28.78/21.74)	KGGFVRFKN.TDIASSVS
  178-  195 (23.31/16.21)	KGKVSSLRNaVRAAPTVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08867 with Med32 domain of Kingdom Viridiplantae
Unable to open file!