<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08861

Description U-box domain-containing protein 52
SequenceMSQRDYSEGAAFPLVAVAIDKDKGSQNALKWALDNIISRGQTITLIHVNTGKTPSSGLQEDSANGARDIFIPFRIFCKRKDVHCKDIILDETDVAKAVIEFISHAAIEKLAVGAPSRGFVRFKGTDVSTSISRNAPDFCTVYVISKGKVSSQRNAVRAAPAVSPLRAQIQNQSNIKPDLVNQQSLNATKAEAAWETRNPYTEKDSIRSPFGRGGRYPASRMSGEMMPESDISFVSNGRPSTDRGFNARLSNMSDSFDRSFEMMQSPQNNIMNEFSSASFESSSSHGVTEDIEAEMKRLRLELKQTMDMYSTACREALVAKQKAMELHRWKLEEAHRLGEARLAEEAALALAEKERTKCMAALEAAEASKRIAELEAQKRINAEKKALQESEEKKKALSALAQTDARYRKYSIVEIEAATDYFADNRKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGREQFQQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRRGNTPPIPWQHRFRISAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVANNVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGILLLQLITAKPPMGLTHYVERAIEKGTFREMLDPTVADWPVEDACRLAEVALKCAELRRKDRPDLGTVVLPELNRLRALGEENLQFCVMGSSSTATGNIGLSMRRRNKTTELLKQ
Length727
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.07
Grand average of hydropathy-0.407
Instability index50.47
Isoelectric point8.50
Molecular weight81018.53
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08861
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.88|      22|      26|     319|     344|       1
---------------------------------------------------------------------------
  323-  344 (39.67/25.65)	AMEL...HRWKLEEAHRLGEA..RLAE
  347-  373 (26.21/ 8.11)	ALALaekERTKCMAALEAAEAskRIAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.83|      57|     341|     136|     204|       2
---------------------------------------------------------------------------
  136-  204 (77.20/73.15)	PDF.CTVY.VISKGKVsSQRNAVRA.APAVsPLRAQIQNQSNIKPDLVnqqSLNATKAEaawetrnPYTEKD
  485-  544 (93.64/55.25)	PEYgCLVYeYMANGSL.EDRLFRRGnTPPI.PWQHRFRISAEIGTGLL...FLHQTKPE.......PLVHRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.79|      34|     341|     286|     319|       3
---------------------------------------------------------------------------
  286-  319 (57.92/34.16)	GVTEDIEAEMKR..LRLELKQTMDMYS..TACREALVA
  626-  663 (51.87/29.92)	GLTHYVERAIEKgtFREMLDPTVADWPveDACRLAEVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.41|      15|      16|     251|     265|       4
---------------------------------------------------------------------------
  251-  265 (28.49/18.96)	NMSDSFDR.SFEMMQS
  269-  284 (21.92/13.02)	NIMNEFSSaSFESSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08861 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEAAWETRNPYTEKDSIRSPFGRGGRYPASRMSGEMMPESDISFVSNGRPS
190
240










Molecular Recognition Features






MoRF SequenceStartStop




NANANA