<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08859

Description Heat shock cognate 70 kDa protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFGVGFYKILLRYEDMASGCRTVTSLVLAIIIFTVYILFLLQSTIIFCVSDAKRLIGRRFSDASVQSDIKLWPFKVIAGPGDKPMIVVQHKGEDKQFAAEEISSMVLMKMREIAEAYLGFAIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPRVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKISSKLSPADKKKIEDAIDQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGAGADMGGGMDEDGPSAGGSGAGPKIEEVD
Length696
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.07
Grand average of hydropathy-0.290
Instability index33.09
Isoelectric point5.25
Molecular weight76329.06
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08859
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     261.95|      88|     259|     187|     286|       2
---------------------------------------------------------------------------
  187-  286 (121.22/97.44)	LGFAIKNAVVTVPAYFNDSqrQATKDAGVIAGLNvmriINEPTAAAIAYGLDKkaTSVGEKNVL.IFDLGG...GTFDVSLLTIeegIFEVKATaGDTHLGGED
  455-  546 (140.73/81.05)	LGLETAGGVMTVLIPRNTT..IPTKKEQVFSTYS....DNQPGVLIQVYEGER..TRTKDNNLLgKFELSGippAPRGVPQITV...CFDIDAN.GILNVSAED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.55|      14|     271|      72|      85|       4
---------------------------------------------------------------------------
   72-   85 (26.61/18.19)	GVGFYKILL..RYEDM
  344-  359 (20.94/12.82)	GVDFYSTITraRFEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.94|      18|      31|     573|     591|       5
---------------------------------------------------------------------------
  573-  591 (27.10/24.56)	VQDaEKYKSE.DEEHKKKVE
  607-  625 (25.84/17.56)	VKD.EKISSKlSPADKKKIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.11|      24|     483|     162|     185|       7
---------------------------------------------------------------------------
  162-  185 (39.89/28.28)	EDKQFAAEEISSMVLMKMREIAEA
  647-  670 (43.22/31.23)	EDKMKELEGICNPIIAKMYQGAGA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08859 with Med37 domain of Kingdom Viridiplantae
Unable to open file!