<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08855

Description U-box domain-containing protein 52
SequenceMVEASPRIVLIIIDFIDGYATVEAGPEPTKEEVEAEMTQLFLPYRGFCARKGVSIVFLMHRSIKFWKHRRRYTNANIYNIGYRTSNGCRTSTVIMKLYLHKFLAETFQMQMREVVLEDVDISKALADYITTHHIHNIVVGASNRNALTRKFRNPDVPTCLMKSAPEYCAVYVIYKGKAITVRAAKGPAPANGIPPRQFPVPESPHRLPDQGEGSVRYKSRIKNPFSKGSWRGHIPPSQRSDRSLEAFHGHIKTPSRDRPLSTAKTAPSDALLEYLDSSVRPPRSSFSRDSSDEIDLTKSMDFQAMDFGHLTDPSSASPESPSSAGVSTQKKTLLLLLLSARQQRDIEAEMKRLRLELKQTMEMYNTACKEATIAKQKAKELQEEARKFEERKHAEEAALALVEMEKAKCRAAIEAAEAAQRIAELEAQKRLKAERKAKREAEEKKRALDALAHSDVRYRKYSIEEIKAATSYFTESLKIGEGGYGPVYRACLDHTPVAIKVLSPDASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLFRRGGTAAMPWGVRFKIAAEVATGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPASVADEVTQYRMTSTAGTFCYIDPEYQQTGMLGTKSDVYSLGILLLQMVTARSPMGLTHHVERAVEEGKIEEVLDPALQDWPAQEALDFARLALRCAELRRRDRPDLASVVLPELNRFRNLALAHDAALPSCR
Length754
PositionTail
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.07
Grand average of hydropathy-0.397
Instability index49.61
Isoelectric point8.94
Molecular weight84732.33
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08855
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.04|      37|      44|     362|     404|       1
---------------------------------------------------------------------------
  365-  401 (60.91/51.47)	NTACK...EATIAKQKAKELQEEARKFEERK...HAEEAALAL
  406-  448 (49.13/23.80)	KAKCRaaiEAAEAAQRIAELEAQKRLKAERKakrEAEEKKRAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.52|      46|      58|     217|     272|       2
---------------------------------------------------------------------------
  174-  210 (27.79/ 9.33)	......Y.KGKaITVR...AAKGPAPANgIPPRQfpvpESPHRL.........PDQ..
  211-  258 (75.26/43.68)	GEGSVrY.KSR.IKNP...FSKGSWRGH.IPPSQ....RSDRSLEAFhGHIKTPSRDR
  268-  317 (59.47/44.81)	SDALLeYlDSS.VRPPrssFSRDS.SDE.IDLTK....SMDFQAMDF.GHLTDPSSAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08855 with Med32 domain of Kingdom Viridiplantae
Unable to open file!