<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08852

Description Pre-mRNA-processing protein 40C
SequenceMSTSARLSQEVQSSASTETPISQIVESPIGGQNSTLPPSVSTSLTSPSPIGGPTSSTATQTASTPAQDSAPLTTLIAPITHAANPAAPRGILVNPNDPSQDPVRAKYAGSPGYVVPAPSFSYNAFPRVSPAVGSNQQSSPAPAFRLTPPMPPAALQPPVPGQYLGNRPSFSYNVVPHANSSLPTGQQFQLNTAANQAHLQSGNIVPQNTAVRSQPPVPMQSVRPNTIFSGPIMPNPPAPVRLPVPMPKGDPSKPTNFSFSSNSPQAPVEASEKEVPSNTGAVALESGTSGTSVTSQPSSSSGTSVPNPSLVSSTTTSHSTTMTSPMRPLVPSSASLIHTSTSPTTVIQNVHQFYPTYPSAPAVVPPSQSPWVHTPQVGSLQRPPILPYAIGPPALFPSPMHGVPQSATPLNNFWPPGVSTNVSSEEPKSTNHDKETSDLRKEEGTVKTEDADAWTAHRTESGVVYYYNSVTKESTYEKPAGFKGEPEKVSTPSVPVSWEKLPGTDWTLVTTNDGKKYYYDAKNKVSCWQLPPEIAELKKNQENDSLKENVTQLQNSGLLPDKGSATVSASAPAALTGGRDSVSLRTSGTPVSSSALDLIKKKLQDAGTPGTTPPPAVGSGTSDLNGSKAVEAAAKGQQVSNNKDKPRGTDGDGLMSESSSDSDDEESGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRAIFEHYVRTRAEEERKEKRAAQKAAMEAFKQLLEEASEAADENFKAIRMATITSFKSMLQESGDITLNSRWSKVKDNFRNDPRYKAVNHEEREILFNEYITELKSAEDEAERSAKSKMDEQEKLRERERETRKRKEREEQEMERVRLKIRKKEAIASYQALLVEAIKDPKVSWTESKPKLEKDPQGRATNPDLGQGDAEKLFREHIKELCERCAREYRTLLSEIITPEAAAQPADDGKTVLTSWSEAKRILKPDPRYSKLPSKDRESIWRRYADDMIRKQKQKSDSKEKPDTNGRNRTSTDPSRRSNGRRKLFDISCKTRMDGIGEGEMLRETAKGRE
Length1054
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-0.781
Instability index55.40
Isoelectric point8.68
Molecular weight114787.76
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08852
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     250.11|      40|      49|      98|     137|       2
---------------------------------------------------------------------------
   98-  125 (41.73/12.12)	........................PS......QD............PVRAKYAGSPG..YVVPA.P.......S..FSYNAF
  126-  175 (41.96/12.23)	PRV.SPAVGSN.QQsspapafrltPPmppaalQP............PVPGQYLGNR.........P.......S..FSYNVV
  264-  310 (28.80/ 6.04)	PQ..APVEASEkEV..........PS......NTgavalesgtsgtSVTSQPSSSSG..TSVPN.P.......S..L.....
  311-  357 (29.55/ 6.39)	..V.SSTTTSH.STtmtspmrplvPS......SA............SL.IHTSTSPT..TVIQNvH.......Q..F.YPTY
  370-  413 (31.17/ 7.16)	PWVhTPQVGSL.QR......ppilP..........................YAIGPP..ALFPS.PmhgvpqsA..TPLNNF
  416-  457 (40.72/11.65)	PGV.STNVSSE.EP........ksTN......HD............KETSDLRKEEG..TVKTE.D.......A..DAWTAH
  458-  501 (36.19/ 9.52)	RTE.SGVVYYY.NS..........VT......KE............STYEKPAGFKGepEKVST.P.......SvpVSWEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.38|      16|      18|      16|      31|       3
---------------------------------------------------------------------------
   16-   31 (30.25/13.89)	STETP.ISQIV..ESPIGG
   34-   52 (22.13/ 8.30)	STLPPsVSTSLtsPSPIGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     425.23|      91|      91|     660|     750|       4
---------------------------------------------------------------------------
  660-  736 (114.61/70.07)	.................SDSDDEESGPT..........KEECIIQFKEMLK..ERG.VAPFSKWEKELPKIVFDPRFKAI.PSYSARRA..IFEHYVRTRAEEERKEKRA
  737-  829 (131.01/81.21)	AQKAAMEAFKQLLE.eaSEAADENFKAI..........RMATITSFKSMLQ..ESGdITLNSRWSKVKDNFRNDPRYKAV..NHEEREI..LFNEYITELKSAEDEAERS
  830-  935 (115.82/70.89)	A.KSKMDEQEKLRErerETRKRKEREEQemervrlkirKKEAIASYQALLV..EAI.KDPKVSWTESKPKLEKDPQGRATnPDLGQGDAekLFREHIKELCERCAREYRT
  938-  988 (63.80/35.53)	SEIITPEAAAQ........................................paDDG.KTVLTSWSEAKRILKPDPRYSKL.PS.KDRES..IWRRY..............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08852 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEDEAERSAKSKMDEQEKLRERERETRKRKEREEQEMERVR
2) FPRVSPAVGSNQQSSPAPAFRLTPPMPPAALQPPVPGQY
3) IQNVHQFYPTYPSAPAVVPPSQSPWVHTPQVGSLQRPPIL
4) IWRRYADDMIRKQKQKSDSKEKPDTNGRNRTSTDPSRRSNGRRKLFDISCK
5) LPPEIAELKKNQENDSLKENVTQLQNSGLLPDKGSATVSASAPAALTGGRDSVSLRTSGTPV
6) MSTSARLSQEVQSSASTETPISQIVESPIGGQNSTLPPSVSTSLTSPSPIGGPTSSTATQTASTPAQDSAPLTTLIAPITH
7) SSALDLIKKKLQDAGTPGTTPPPAVGSGTSDLNGSKAVEAAAKGQQVSNNKDKPRGTDGDGLMSESSSDSDDEESGPTKEECII
8) SSLPTGQQFQLNTAANQAHLQSGNIVPQNTAVRSQPPVPMQSVRPNTIFSGPIMPNPPAPVRLPVPMPKGDPSKPTNFSFSSNSPQAPVEASEKEVPSNTGAVALESGTSGTSVTSQPSSSSGTSVPNPSLVSSTTTSHSTTMTSPMRPLVPSSASLIHTSTSPTT
9) YAIGPPALFPSPMHGVPQSATPLNNFWPPGVSTNVSSEEPKSTNHDKETSDLRKEEGTVKTEDADAW
822
125
347
984
530
1
593
180
388
862
163
386
1034
591
81
676
345
454










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDLIKKKLQ
2) GRRKLFDISCKTRMDGIGEGEMLRE
3) KKYYYD
4) KTVLTSWSEAKRILKPDPRYSKLPSKDRESIWRRYADDMIRKQK
5) LTTLIAPITH
6) VRAKYAGSPGYVV
595
1024
515
954
72
103
604
1048
520
997
81
115