<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08852

Description Pre-mRNA-processing protein 40C
SequenceMSTSARLSQEVQSSASTETPISQIVESPIGGQNSTLPPSVSTSLTSPSPIGGPTSSTATQTASTPAQDSAPLTTLIAPITHAANPAAPRGILVNPNDPSQDPVRAKYAGSPGYVVPAPSFSYNAFPRVSPAVGSNQQSSPAPAFRLTPPMPPAALQPPVPGQYLGNRPSFSYNVVPHANSSLPTGQQFQLNTAANQAHLQSGNIVPQNTAVRSQPPVPMQSVRPNTIFSGPIMPNPPAPVRLPVPMPKGDPSKPTNFSFSSNSPQAPVEASEKEVPSNTGAVALESGTSGTSVTSQPSSSSGTSVPNPSLVSSTTTSHSTTMTSPMRPLVPSSASLIHTSTSPTTVIQNVHQFYPTYPSAPAVVPPSQSPWVHTPQVGSLQRPPILPYAIGPPALFPSPMHGVPQSATPLNNFWPPGVSTNVSSEEPKSTNHDKETSDLRKEEGTVKTEDADAWTAHRTESGVVYYYNSVTKESTYEKPAGFKGEPEKVSTPSVPVSWEKLPGTDWTLVTTNDGKKYYYDAKNKVSCWQLPPEIAELKKNQENDSLKENVTQLQNSGLLPDKGSATVSASAPAALTGGRDSVSLRTSGTPVSSSALDLIKKKLQDAGTPGTTPPPAVGSGTSDLNGSKAVEAAAKGQQVSNNKDKPRGTDGDGLMSESSSDSDDEESGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRAIFEHYVRTRAEEERKEKRAAQKAAMEAFKQLLEEASEAADENFKAIRMATITSFKSMLQESGDITLNSRWSKVKDNFRNDPRYKAVNHEEREILFNEYITELKSAEDEAERSAKSKMDEQEKLRERERETRKRKEREEQEMERVRLKIRKKEAIASYQALLVEAIKDPKVSWTESKPKLEKDPQGRATNPDLGQGDAEKLFREHIKELCERCAREYRTLLSEIITPEAAAQPADDGKTVLTSWSEAKRILKPDPRYSKLPSKDRESIWRRYADDMIRKQKQKSDSKEKPDTNGRNRTSTDPSRRSNGRRKLFDISCKTRMDGIGEGEMLRETAKGRE
Length1054
PositionUnknown
OrganismAnanas comosus (Pineapple) (Ananas ananas)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Bromeliaceae> Bromelioideae> Ananas.
Aromaticity0.06
Grand average of hydropathy-0.781
Instability index55.40
Isoelectric point8.68
Molecular weight114787.76
Publications
PubMed=27374615

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08852
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     250.11|      40|      49|      98|     137|       2
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   98-  125 (41.73/12.12)	........................PS......QD............PVRAKYAGSPG..YVVPA.P.......S..FSYNAF
  126-  175 (41.96/12.23)	PRV.SPAVGSN.QQsspapafrltPPmppaalQP............PVPGQYLGNR.........P.......S..FSYNVV
  264-  310 (28.80/ 6.04)	PQ..APVEASEkEV..........PS......NTgavalesgtsgtSVTSQPSSSSG..TSVPN.P.......S..L.....
  311-  357 (29.55/ 6.39)	..V.SSTTTSH.STtmtspmrplvPS......SA............SL.IHTSTSPT..TVIQNvH.......Q..F.YPTY
  370-  413 (31.17/ 7.16)	PWVhTPQVGSL.QR......ppilP..........................YAIGPP..ALFPS.PmhgvpqsA..TPLNNF
  416-  457 (40.72/11.65)	PGV.STNVSSE.EP........ksTN......HD............KETSDLRKEEG..TVKTE.D.......A..DAWTAH
  458-  501 (36.19/ 9.52)	RTE.SGVVYYY.NS..........VT......KE............STYEKPAGFKGepEKVST.P.......SvpVSWEKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.38|      16|      18|      16|      31|       3
---------------------------------------------------------------------------
   16-   31 (30.25/13.89)	STETP.ISQIV..ESPIGG
   34-   52 (22.13/ 8.30)	STLPPsVSTSLtsPSPIGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     425.23|      91|      91|     660|     750|       4
---------------------------------------------------------------------------
  660-  736 (114.61/70.07)	.................SDSDDEESGPT..........KEECIIQFKEMLK..ERG.VAPFSKWEKELPKIVFDPRFKAI.PSYSARRA..IFEHYVRTRAEEERKEKRA
  737-  829 (131.01/81.21)	AQKAAMEAFKQLLE.eaSEAADENFKAI..........RMATITSFKSMLQ..ESGdITLNSRWSKVKDNFRNDPRYKAV..NHEEREI..LFNEYITELKSAEDEAERS
  830-  935 (115.82/70.89)	A.KSKMDEQEKLRErerETRKRKEREEQemervrlkirKKEAIASYQALLV..EAI.KDPKVSWTESKPKLEKDPQGRATnPDLGQGDAekLFREHIKELCERCAREYRT
  938-  988 (63.80/35.53)	SEIITPEAAAQ........................................paDDG.KTVLTSWSEAKRILKPDPRYSKL.PS.KDRES..IWRRY..............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08852 with Med35 domain of Kingdom Viridiplantae
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