<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08839

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAAEDSNKRIKLNLEPSLDRLPFDITQKAEEIYLPDGDPSEKLKRKIKVISDAAGDHYDRYTDNVASADEPTEGSALVTAAGTDGFNVQDQPVGGVAAATNARVTTPQQIYAKLWHAQSEIGIALDVLNIIISSFQLPSGAGGPGSNFPPNAPPTALPPGSLKCEQVPKPILVSAQIQNEKLALGAKRQQLRNAADILMQGAQKLRRVMVDEDQFWAGALRLRKNNWCLVSGRSGQQGHNQQGLQMHHQHGGRQGTGSQLFVHYGFRDVGSLYGERAYAELVRNPLSRDDSSGTARSIELNIPNKSGKVLIMSLMQQGAVCIQGPREAKGRKANTLHTQLLEAQDSLFDGELFHELVNEARTMTGSVSIVDNEILLSINEELELRIAYRRLTSDDLPSGSLPKSDLTKRYQGIADVMRYAIQLTQHRRFRQNIKERSDSFFKSSRPGGGRAAGTFGQIQQTLQLRPTTMLSMMMQVLQYFTFSRRVRDVLARSTRNLRQSWWEAIQLQSVDIKSPPPSLVTSGCGTGSAGFQTPLLLNSTLASSLRNVSNYGMGSAVSIRVGKKAHPIRFVIRSHPLPCVVLQLSDRPSAPMAHIAEFEKVLEQELASRAIGRICDVLNSIHDWSELVPGLQSPRFVIDIEQHCVGVFAIPQQRGEVGKLKSSHIHLIVDMKADRAISITIICNQDRFRSKRIFLEDQPLQATQPTSGTDGIHPHDDGAVTIGATCSTTGGRTMETFRSWLQQNILAELDF
Length751
PositionHead
OrganismMortierella elongata AG-77
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mortierellomycotina> Mortierellomycetes> Mortierellales> Mortierellaceae> Linnemannia.
Aromaticity0.06
Grand average of hydropathy-0.351
Instability index51.04
Isoelectric point8.89
Molecular weight82693.01
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08839
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.26|      61|     625|      59|     126|       2
---------------------------------------------------------------------------
   59-  126 (84.89/78.74)	DRY.TDNVASADEPTEgsALVTAAGTDGFNVQDQ...PVGGVAAATNARVttpQQIYaKLWhAQSEIGIALD
  686-  750 (100.37/66.07)	DRFrSKRIFLEDQPLQ..ATQPTSGTDGIHPHDDgavTIGATCSTTGGRT...METF.RSW.LQQNILAELD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.67|      21|      50|     422|     471|       5
---------------------------------------------------------------------------
  422-  445 (31.60/58.79)	QLTQHRRFRQNIKersDSFFKSSR
  475-  495 (35.07/ 7.48)	QVLQYFTFSRRVR...DVLARSTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.99|      13|      14|     235|     248|       6
---------------------------------------------------------------------------
  235-  248 (22.69/17.81)	GQQGHNQQgLQMHH
  252-  264 (25.29/14.39)	GRQGTGSQ.LFVHY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08839 with Med17 domain of Kingdom Fungi
Unable to open file!