<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08828

Description Mediator of RNA polymerase II transcription subunit 10
SequenceMENTRVSKISLHLVLFPSLSLTSICTSRKGTGGRTKNTNQACVFAPLRTFHYRQSKQAYNDAIRNDVSKGQARAHKDKQTHSNNSNSNNNNNYNNTINRMASAYNDSQSSIQNNMVPTPSQTTPSTIPSAQGAGGLVGATGVVPGATTTQEPPLSSTSTSAPSTTTAAAGVGGGSAQPDATELAAAETEKQREALEKKLQELIQSLLELSITVYDFQAESNSLVHQKIQELTKQLGEIEAFKDQLDMMVPWEVLSYIEDGKNPDLFSKTFVEAVAGENQFTNGKVTAMKSFEAALAQNLGDAFPEDMADYSQILQEVSSKSGQSATSQ
Length328
PositionMiddle
OrganismMortierella elongata AG-77
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mortierellomycotina> Mortierellomycetes> Mortierellales> Mortierellaceae> Linnemannia.
Aromaticity0.05
Grand average of hydropathy-0.556
Instability index42.46
Isoelectric point5.47
Molecular weight35221.50
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364146

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08828
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.70|      22|      27|     116|     142|       1
---------------------------------------------------------------------------
   14-   33 (29.76/10.62)	VL..FPSL.........SLTSICTSRKGTGG.........
  116-  139 (38.32/23.24)	VP..TPSQ.........TTPSTIPSAQGAGGlvG.....A
  143-  180 (21.62/13.27)	VPgaTTTQepplsststSAPSTTTAAAGVGG..GsaqpdA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.64|      22|      27|      60|      84|       2
---------------------------------------------------------------------------
   60-   84 (29.30/30.21)	NDAIRNDVSKgQARAHKDKQthS...NN
   90-  114 (35.34/22.32)	NNNYNNTINR.MASAYNDSQ..SsiqNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.94|      20|      27|     182|     208|       3
---------------------------------------------------------------------------
  189-  208 (31.31/29.26)	EKQREA...LEKKLQELIQSLLE
  215-  237 (28.64/12.01)	DFQAESnslVHQKIQELTKQLGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08828 with Med10 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QSKQAYNDAIRNDVSKGQARAHKDKQTHSNNSNSNNNNNYNNTINRMASAYNDSQSSIQNNMVPTPSQTTPSTIPSAQGAGGLVGATGVVPGATTTQEPPLSSTSTSAPSTTTAAAGVGGGSAQPDATELAAAETEKQREAL
54
195










Molecular Recognition Features






MoRF SequenceStartStop




1) ADYSQILQ
308
315