<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08814

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAYSVNISVEAPIENQIQEITYDGQEIYQAPLTLSENLAKIAQKIDFSKTNGEEVKKEQLEGNEKNEEDTKDPASFQSSLWPWDSVRNKLRNALTEVCVLADVLAIAKERNYMVLDPTSHESADVKPMIQVYARKKALAGAASVLMMGTERLRNCQAELARTRSTPDFHIELLRLRQNWRLKKVSNSIIGDLSYRTAGSKYTQTGMFEVTKAEEEEKSSNSPPASPNTGSSMSGQSHGPSNSKASALRVTIPSELQGVAYIEVLCQKDQEDLCSANSLLNSSANNSNTDMHWQQKLEAAQNVLFCKELFSQLAREAVHLRAPIPHMVVGNQIMATVLPGIQLIIGLCHSTGNDKKPTAPPPHKTDHDHVLEHSLHQLLREVHYNNSNHPFPHPASGPLGPSKRRYVAGPTAADRYELLEMTKSQTLLEQIIQQAQHFFMRLRTEYVLDTIAKEVKDPLIVSHWNALNSPTQSCVKINILTHGYDSVCRTSMVVHVGEKSLKCVCRDGRVMHMSYEPQELRDLIFCQIYQHQISAVQALAKCMGWQFLANSSHLGLGSVEPLGNASSCILASPIGDRMIAVRCEPQTGVQVAIAHSPRKDFFPGQLVRERKWENLGGSFKEVRWDKMEGKNFLNKMELLMASLTSS
Length645
PositionHead
OrganismTrachymyrmex septentrionalis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Trachymyrmex.
Aromaticity0.06
Grand average of hydropathy-0.406
Instability index45.07
Isoelectric point6.91
Molecular weight71990.23
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08814
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.37|      21|     166|     219|     239|       1
---------------------------------------------------------------------------
  219-  239 (42.10/23.83)	SNSP...PASPNTGSSMSGQSHGP
  386-  409 (37.27/20.31)	SNHPfphPASGPLGPSKRRYVAGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.46|      37|      65|     278|     318|       2
---------------------------------------------------------------------------
  278-  318 (49.57/51.76)	LLNSSANNSNTDMHWQQKLEaAQNVLfcKELFSQLAREaVH
  346-  382 (68.89/49.40)	LCHSTGNDKKPTAPPPHKTD.HDHVL..EHSLHQLLRE.VH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.47|      36|      43|      72|     111|       4
---------------------------------------------------------------------------
   72-  111 (54.71/48.06)	DPASFQSS.LWPWDSVRNKlRNALTEVcvlADVLAIAKE..RN
  116-  154 (53.76/34.15)	DPTSHESAdVKPMIQVYAR.KKALAGA...ASVLMMGTErlRN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08814 with Med17 domain of Kingdom Metazoa
Unable to open file!