<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08781

Description "Protein tramtrack, alpha isoform"
SequenceMGSEHYCLRWNNHQSNLLGVFSQLLESESLVDVTLACTEGPSIRAHKVVLSACSSYFQTLFLDHPNRHPIVILKDVRFAELRTLVDFMYKGEVNVEYCQLSALLKTAESLKVKGLADMTNINAAVASREEQQQQQQQQQQQQQQQHTSTSDTSREHHRERERERERDRESIKETSGKERERESNVTTGVSAGAKECEQQQQQQQQQQQQQQQQQQQQQSSNIVQSTPSETAEAVDMTDCSPSPVGPGSPCPGPLALDRPRRDSEDAASLEETRAGSLSPISVHSGPSDMSLSNNTGGAPGGVLPLNLPQSRLPSPHSTEPLAGPSGLPPVQQVPLSLKKEMDWERSTEERSASSEISADYRLPPDPELMGVDERVFACMYCGASFLHQSKLTRHILSHSLESLKYREQAAHLQLQAQLGLEPGMHLPPEAHYPAAGTIEPMDFELAAHSDPTSGVVLCKFCGKSFPDVGSLIAHLPAHTGDRPFKCEFCGKAFKLRHHMKDHCRVHTGERPFRCTLCGKTFSRSTILKAHEKTHYPKYVRKFLSPSPVDPSEEEAPPPPPPHH
Length563
PositionTail
OrganismCyphomyrmex costatus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Cyphomyrmex.
Aromaticity0.05
Grand average of hydropathy-0.733
Instability index70.79
Isoelectric point6.09
Molecular weight62604.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08781
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.99|      32|      65|     119|     153|       1
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  119-  151 (56.25/30.63)	TNINAAV.ASREEQQQQQQQQQQQQQQQHTStSD
  183-  210 (41.65/12.25)	SNVTTGVsAGAKECEQQQQQQQQQQQQQ......
  211-  229 (26.09/ 9.64)	..............QQQQQQQQSSNIVQSTP.SE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     131.76|      25|      25|     478|     502|       2
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  373-  398 (30.42/15.14)	...ERVFACMYCGASFlhqsKLTRHILSH
  478-  502 (53.33/31.51)	HTGDRPFKCEFCGKAF....KLRHHMKDH
  506-  530 (48.02/27.72)	HTGERPFRCTLCGKTF....SRSTILKAH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.73|      37|      76|     240|     291|       3
---------------------------------------------------------------------------
  240-  265 (43.50/11.95)	............SPSPVGPGSPCPGPLALDRPRRDSED
  281-  310 (39.33/25.77)	SVHSGPSDMSLsNNTGGAPG....GVLPLNLPQS....
  311-  345 (54.90/15.59)	RLPSPHSTEPLaGPSGLPPVQQVP..LSLKK.EMDWER
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.52|      10|      17|      75|      84|      12
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   75-   84 (16.08/ 8.69)	DVRFAELRTL
   94-  103 (17.44/ 9.94)	NVEYCQLSAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08781 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTNINAAVASREEQQQQQQQQQQQQQQQHTSTSDTSREHHRERERERERDRESIKETSGKERERESNVTTGVSAGAKECEQQQQQQQQQQQQQQQQQQQQQSSNIVQSTPSETAEAVDMTDCSPSPVGPGSPCPGPLALDRPRRDSEDAASLEETRAGSLSPISVHSGPSDMSLSNNTGGAPGGVLPLNLPQSRLPSPHSTEPLAGPSGLPPVQQVPLSLKKEMDWERSTEERSASSEISADYRLPP
118
364










Molecular Recognition Features






MoRF SequenceStartStop




1) YPKYVRKFLSPSPVDPSEE
535
553