<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08770

Description Uncharacterized protein
SequenceMSTSLTSLQPNSQSLERQKHVRTTTERLYNSLTKKRKDPKQANVQRMWINYEDCKDDFWAAIRSNYDYIMDTNLIDTCKEANGELTWDETDVSTQLWNLKEVSNQFSELYSWLRILQELVYSKEENLLDKSLRAAHMEELRRKAYRRKLFNEQAEKLISRAPALKDEVAWRVDHLNAKWELVEQIMAPIDQPVSSQQDISADFEREVKCLRKWLREMESRLQPLSFHINWTLPELEDKAVEHMVLQRDIEAHGRIVSSIVKLGDKVFTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQEQQREKKQQFLQPLRIVRSLERRWHLLFLRALEWQCHIETLVSHIRNKNAVPYGCSSDSDEEPVTKQPRLSRGRSRGSEAESPGQSARSARTERAKRAVGRPRSEYCDHPVSNERIDQSDSDAVSENQSISEGSYFEDELSQLYVMDARSDQTEKREATISITSIAGDRGEEGDVEESGASDNEQHNMPPTPDTVPITTTTAAMQETCDEIDAASTVQIESTEKTNNGLRTNELVKRCCGATDEAASFNTSDRKSKNCATFYFKHLDTDSEADCGQLVQESSNTVDDSSEEEWTYTPARRNGSLVVSEQRRTNVVVRLDFGETPKIDLSEKMHFVQRKSSGNEKEAEHDGHRVQQKESDDEKKTDKSSIERLIKEVENLIGEERHTVSRTFPQLEFEEKNITNNHRAKYARVKEWLKLNASRSYEGKSQPLDSCDASGEYTTEESDAERQSISSDDLQSSVATYRRFEGALATSQSPSQEILDYVQKTPVNEISPDENTPKVIMRSKQKAKGSRPWSVSCISQIGDNHTLAQKDNPILPFLSETALHQLVATLPTKSVSFDAAGSRKSFNNSASTLLEESFMCSDDRVARNISFRRKKNRLRKKTLGRKSESSSESAHANHHSAGSDGSSNQQRSSRKMNPNRTTHSVSKENCHSRSTTLVKSGSFSGCTVHQQLHVERTLVSNPTPLRLLCCKSVASTLETEGEDRDCAQGHFAYNNILSTVLNSKELSNQQLNIDSDVEMHSLGNNSLPEQAWDNYQEKYMSEAYSEPLDVETARELLDFGDDYRNFLDSHSECASSISAIPARLPLPKTRTYHEIDDSTEDSDNDEEDLRKIVENSQAQLILAENTFVRSNGAVPSELAEVESACKENLGCLQAVLESQNGYLRNEKYSKQIRGTIERWETLSSRVEQAQMASSLHHKLAAMKTEFKTMYDRFFDYEIGLELPNVLDDRINEINAELAVLKDRKAAMATLNASAHLLTSPRTDLGASAPLICTALKDGVADLYRIWDETFQKGTQQLCVLQAMQQFGIRLAELQSALQRDKNTLEVLDMALDMQAGVTSEVASSVCHVARLLSEEQDINCQNDAVLNDVTTEEMHCGKFTGSPASNHTQEGGSLSDSGISDSGSDQELSERERRLAALRRLTRSLETQLTPGSEVLTDLWKRIEYAETELRDLQKQCRELIMRTHERASMDVRAIKRTASQVHYPADKRKRTIGGTDTSKGDTESVSTTRSETKDDPNGDGKPISQNWVRIKRIGKAAKFSFALLTVFFAAIIYFLRPYCCEAGNTLNRFTLQVRYPRGPPPV
Length1626
PositionTail
OrganismCyphomyrmex costatus
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Cyphomyrmex.
Aromaticity0.06
Grand average of hydropathy-0.862
Instability index60.82
Isoelectric point5.50
Molecular weight184854.68
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08770
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     132.59|      15|      15|     269|     283|       1
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  269-  283 (35.33/18.39)	QQQQQQQQQQQQQQQ
  285-  299 (35.33/18.39)	QQQQQQQQQQQQQQQ
  300-  313 (33.33/16.94)	QQQQQQQQQQQQQ.Q
  314-  328 (28.58/13.50)	QQQQQEQEQQREKKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.83|      16|      16|     653|     668|       2
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  653-  668 (28.75/18.85)	HFVQRKSSGNEKEAEH
  671-  686 (28.08/18.21)	HRVQQKESDDEKKTDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.04|      14|      15|    1038|    1052|       3
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 1038- 1052 (18.66/13.95)	NILSTVlNSKELSNQ
 1055- 1068 (25.38/14.62)	NIDSDV.EMHSLGNN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.67|      16|      16|     374|     389|       4
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  387-  405 (20.15/ 8.37)	QPRlsrGRSRGSEAESPGQ
  406-  421 (20.52/ 8.67)	SAR...SARTERAKRAVGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.80|      29|      33|     528|     560|       5
---------------------------------------------------------------------------
  528-  548 (29.77/18.43)	........................................CDEI.DAASTVQIES..............TEKTNNG
  549-  622 (22.13/24.52)	LRTNELVKrccgatdeaasfntsdrkskncatfyfkhldtDSEA.DCGQLVQ.ESsntvddsseeewtyTPARRNG
  630-  651 (24.89/15.12)	RRTNVVVR....................................lDFGETPKIDL..............SEK....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.68|      28|      33|     922|     949|       6
---------------------------------------------------------------------------
  922-  949 (47.35/30.01)	RKKTLGRKSES.SSESAHANHHSAGSDGS
  957-  985 (45.33/28.39)	RKMNPNRTTHSvSKENCHSRSTTLVKSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.54|      17|      33|     178|     194|       7
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  167-  183 (28.30/16.57)	EVAWRVDHLNA.................KWELVE
  184-  216 (19.18/ 8.79)	QIMAPIDQPVSsqqdisadferevkclrKW.LRE
  217-  234 (17.06/ 6.98)	..MESRLQPLS..............fhiNWTLPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.05|      19|      37|      40|      59|       8
---------------------------------------------------------------------------
   40-   59 (34.36/27.63)	KQANVQRMWiNYEDCKDDFW
   79-   97 (34.69/22.62)	KEANGELTW.DETDVSTQLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.96|      13|      37|     569|     581|      10
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  569-  581 (23.63/14.07)	NTSDRKSKNCATF
  603-  615 (24.33/14.74)	NTVDDSSEEEWTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.56|      15|     767|     144|     158|      12
---------------------------------------------------------------------------
  144-  158 (26.42/15.54)	AYRRKLFNEQAEKLI
  883-  897 (25.14/14.44)	AGSRKSFNNSASTLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.12|      29|      43|    1217|    1247|      18
---------------------------------------------------------------------------
 1217- 1247 (42.16/40.16)	GtIERWETLSSRVEQ..AQMAsSLHHKLAAMKT
 1262- 1292 (42.96/30.01)	G.LELPNVLDDRINEinAELA.VLKDRKAAMAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.61|      19|      37|    1090|    1108|      20
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 1090- 1108 (33.79/23.47)	PL.DVETARELLDFGDDYRN
 1128- 1147 (29.82/19.71)	PLpKTRTYHEIDDSTEDSDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.35|      29|     679|     791|     830|      22
---------------------------------------------------------------------------
  791-  822 (43.94/47.03)	LATSQSPsqeILDYVQKTPVNEISPDENTPKV
  850-  878 (47.41/24.49)	LAQKDNP...ILPFLSETALHQLVATLPTKSV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08770 with Med15 domain of Kingdom Metazoa
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