<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08755

Description Mediator of RNA polymerase II transcription subunit 24
SequenceMETKVTSKTSSLKALLLRAWRERWTDLQWGINIKTILPRGVSGDVYNLADCILQQALVGPGPNQLVLSYLKHSLSSQLVSYAAVLQRISKYDAFHKPHCIVSLLEFLESIQVGITCRGKPEEDLLAAAVLSIVHWLLQCYLHTLTKTPQSNPLTPHPSELIDKPASILQQMLNSDFLCAMMYLAKYDDKDLYIEVVKKCQEIETLLKTSTQKSVVPIEDSLKKLCNLEIESLCPEKTKMESITHCLQPLFAVQVLLNPSTETTVFVNQLLMVQRLKSYTNARLYCEIIRACLMCLHNVTGTFKESQWGAFTFLKVPHILKELHVSNLNGDEKFEYSQDILDAFELLLQFTPLLDIMDTTCSCNYVECLLNELQKVNLVTEKQAKQIGARREGATTTSSIPKVIVRAGQTLNGILRTLNADYAKIQEGLLSVLYQVLTGKSFELMLAVATVEGELKTFVTKLIKFNECSKQINEPVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVVLEEGGDSFFEQWVRECMPERNKLKSPQRMLQSVDSARVDALLAQINSPDPDFKSSNLKWHVACQSAMGAVKELLCAWESGVLGAGDVKRALDGLRATACCLPVCAAAWLCAYMSITHQDALLKPMNMVQHFLTPLSGDEMQDNLKDRSSLMVQIIRKMQYDVHPPTQSKTKVLSMSHSIISRQPILEQLESVWQNINQRGWINIQATQSLESLLNTGGSLWFVTNIVKEVLKYRYQEELDQAVDLAFAVFHLDIENCTLDLINHIIPQYLHNSMQSDELVEPQSSILAKLCVYCIFSTLEYNNSNPYRGNSRKRVRRDLDTDDLDALGVSNKLLRLNETGENVPMFSSQSPQAQGSSNGQKSVVILRDPLMTALNNLFTIFAFLAGRDGEVSQQTHFILQFLRLMVQCGKDRTRIVLQGMSQTLVPCLLKALPELFTTDILLRLYDIQTIIGRKATARDLCMLRNINLKPTK
Length978
PositionTail
OrganismAtta colombica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Myrmicinae> Atta.
Aromaticity0.07
Grand average of hydropathy-0.037
Instability index46.96
Isoelectric point6.57
Molecular weight110129.67
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08755
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.93|      43|     275|     396|     463|       1
---------------------------------------------------------------------------
  413-  463 (51.49/74.49)	ILRTLNADYAKI.QEGLLSVlyQvlTGKSFELMLAVAtveGELkTFVTKLIK
  691-  734 (72.44/36.88)	ILEQLESVWQNInQRGWINI..Q..ATQSLESLLNTG...GSL.WFVTNIVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.03|      30|     563|     339|     372|       5
---------------------------------------------------------------------------
  339-  372 (46.65/33.56)	ILDAFELLLQFTP.....LLDIMDTTcscnYVECLLNEL
  904-  938 (47.38/24.02)	ILQFLRLMVQCGKdrtriVLQGMSQT....LVPCLLKAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     251.78|      64|     381|     219|     289|       6
---------------------------------------------------------------------------
  139-  197 (92.21/57.09)	CYLHTLTKTPQSNPLTPHPS...ELidKPASILQQMLNSD.....FLCAMMY...LAKYDDKDLYIEVVK
  225-  289 (106.27/84.69)	CNLEIESLCPEKTKMESITH...CL..QPLFAVQVLLNPSTETTvFVNQLLMVQRLKSYTNARLYCEIIR
  620-  662 (53.30/30.49)	................SITHqdaLL..KPMNMVQHFLTPLSGDE.......MQDNLK..DRSSLMVQIIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.90|      55|     700|      63|     124|       7
---------------------------------------------------------------------------
   63-  124 (86.11/83.47)	NQLVLSYLKHSL.SSQLV.SYAAVLQRISKYdafhkphCIVSLLEFLESIQVGITCRGKPEEDL
  769-  825 (90.80/68.85)	NHIIPQYLHNSMqSDELVePQSSILAKLCVY.......CIFSTLEYNNSNPYRGNSRKRVRRDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.60|      11|     653|     211|     221|       8
---------------------------------------------------------------------------
  211-  221 (19.77/12.89)	QKSVVPIEDSL
  866-  876 (19.83/12.95)	QKSVVILRDPL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08755 with Med24 domain of Kingdom Metazoa
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