<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08744

Description Uncharacterized protein
SequenceMEGAGTGSAAHRRWDTSSSSQHSFRTSVSSAAEITGGDEIMDAILPAPPVENRVFVAVPEDVKHGKNTLLWALENLAKDGSGSGVVIAHVHCPAQMIPMMGGKVHYTMVNAKQVNDHRKKVRARAEEKLNEYVKICIRQKVSCEKIIIDNEDVAKGLEELIALHGITRLVMGAAADKHHSKKMKSLKSKTALRLTEAAASSCKIWFTCKGHLICTREANTTVPAIPPSPAFTVASGSSVTSVGSRLRSMAISHSESDASSSNGSPRHDQIRSRTEVGLYPSLESISTSSGLYESCGRPTRTSRSSIDSWDGFGRRSQNSWHDQSRNDDAVTISGSAMPHEMQEPDDENFSSPSHELENPGLDANANIYRRLTEALSEAERYKREAHEESAKRLRAELDMASALGNVYESYQHEIRQRKTIEETLASKEQEIEEMKRQHDVTSNELNDVKEQKLVLEQQITEMASAIKDYEEKMSANEYLTQMLKTDNDKLRQERDAAVTEAEGLRQKNDNKISAPLPAETLNTEFSYFELEQATEGFDERLKIGEGGFGSVYKGFLRNTIVAVKLLNPQSMQGQSEFNQEVAVLGRVRHPNLVTLIGACREAFGLVYEFLPNGSLEDRLACTDNTPPLTWQVRTKIICEMCSALIFLHSNKPHPVVHGDLKPGNILLNANFVSKLGDFGICRLLSQSSTTITTTRAITTKLHRTTTPKGTFAYMDPEFLSTGELTPRSDVYSFGIIILRLLTGRPPKSIAEVVEDAVERGQLHAVLDPTAGDWPFVQANQLAHIGLRCAEMSRRRRPDLAGEVWKVVEPLMKAASVDAGGWPSSSLDDAHAPSYFVCPIFQEVMSDPHIAADGFTYEAEAITGWFDSGRDTSPMTNLKLDHCELTPNRALRSAILQWQQQRRR
Length903
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.473
Instability index51.62
Isoelectric point6.07
Molecular weight99999.55
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08744
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.47|      15|      52|     543|     558|       1
---------------------------------------------------------------------------
  543-  558 (25.56/20.98)	IG..EGGFGSVYKgFLRN
  596-  612 (24.91/14.68)	IGacREAFGLVYE.FLPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.78|      24|      25|     411|     434|       5
---------------------------------------------------------------------------
  411-  434 (38.74/23.31)	QHEIRQRK..TIEETLASKEQEIEEM
  437-  462 (32.93/18.89)	QHDVTSNElnDVKEQKLVLEQQITEM
  463-  477 (16.11/ 6.08)	ASAI...K..DYEEKMSANE......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08744 with Med32 domain of Kingdom Viridiplantae
Unable to open file!