<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08740

Description Uncharacterized protein
SequenceMSYTFPTQPIVAPAKKKDTRKDAADAAVKHCNPLSSTEHGRAAVAVDGDRGSQYALKWAADNILSRARPFFLIHVRRKPTFLQGPGGKQFAISHVQDDIPADLHAQLDLQAKDLMIPFQCFCSRRGLQCREIVLDGTDVSKAIVDFVVSNKVDKVVLGAASRNAFTRTIWKLDVPTSVTKSAPSYCSVYVIAKGKISSFRPATYANDTGKEDLKSDLPKHNLPSSDESTEGGSFTSSDQQRHSDDSSSVQTASSCPSGFLNDVDQHGYHLSPEYSRPYRHPLLSLNTDNEQASHAPRRRFLGFDDSSLKDSTLNPGYNVYSPLSPTKDDEDELSLFRIERKQKNGDMLPRNNYAEEHKEMARNPKGSSIPPSHRNKPEAEAEACSQSAIGPKHKLLTLDPPPRDAQRGERITEEFKDHDSQEVIHPFLRRWPPISSPRDDTMNGSTPEETRKLDLKLKALPRPIETKRMLECLPTRLECRIFTADDITNATNHFADELKIGEGGYGPVYKATLDNTLVAIKILYSNITQGLKQFRQEVELLNNIRHRNMVHLVGACPEYGCLVYEYMPNGSLEERLFCHSGTPPLPWQLRFRIAVEIASGLLYLHKMKPEAFVHRDLKPGNILLDGNFVTKIGDVGLARIIPRSMDGAAATTQYRETAAAGTFCYIDPEYQKTGLVCTKSDVYALGVIFLQMVTAREAMGLAYAVSDALEEGTFADLLDGKVTGWPVQEAQAFAEIALKCCEMRRRDRPDLETVVMPELIRLHRLVSPSEYSSSSSSLPPSMDQAHHRSASDKELCLDNDLVDILSDGKLKGGASFAI
Length818
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy-0.483
Instability index48.93
Isoelectric point6.43
Molecular weight90887.77
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08740
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     238.33|      49|      50|     309|     357|       1
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  270-  308 (35.06/14.91)	....LSPEYSrpYRHPLLSLNTD.NEQ.AS...............HAPRRRFlgfdDSSL
  309-  357 (80.69/43.32)	KDSTLNPGYN..VYSPLSPTKDD.EDE.LSLFRIERK.QK..NGDMLPRNNY....AEEH
  358-  410 (67.14/34.88)	KEMARNPKGS..SIPPSHRNKPEaEAEaCSQSAIGPK.HKllTLDPPPRDAQ....RGER
  421-  462 (55.44/27.60)	QE.VIHPFLR..RWPPISSPRDD.TMN.GSTPEETRKlDL..KLKALPR...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.55|      33|      50|     629|     663|       2
---------------------------------------------------------------------------
  629-  663 (49.35/38.72)	VTKIGDVGLARIIPRSMDGAAATTqyRETAAAGTF
  682-  714 (54.21/35.33)	VYALGVIFLQMVTAREAMGLAYAV..SDALEEGTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.51|      35|      35|      21|      55|       3
---------------------------------------------------------------------------
   21-   55 (60.13/38.29)	KDAADAAVKHCNPLSSTEHGRAAVAVDGDRGSQYA
   57-   91 (63.37/40.74)	KWAADNILSRARPFFLIHVRRKPTFLQGPGGKQFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.30|      34|      37|     194|     227|       4
---------------------------------------------------------------------------
  194-  227 (57.34/34.61)	GKISSFRPATYANDTGKEDLKSDLPKHNLPSSDE
  232-  265 (57.95/35.06)	GSFTSSDQQRHSDDSSSVQTASSCPSGFLNDVDQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08740 with Med32 domain of Kingdom Viridiplantae
Unable to open file!