<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08735

Description Uncharacterized protein
SequenceMEIEEAAGGGEIGEMEAPAVSTVAVAVSGGRSSKHALKWALDKFVPEGRVLFRILHVHPAITMVPTPMGNFIPISQVREDVASAYRKEAEWQASNMLVPFQKMCAQRKVEAEAVLLESDDVASAISEEIGKFNICKLVLGSSSKNIFRRKLKGSKTATKISECIPSFCTAYVISKGKLSFVRSATSDIAETPRSISSSTVSSPSTRSLSSCGPSEWGDTYGTANVPLHQPSLPLQRDQALAIINKLSNRRASSSSSVVSEVSYNDEPALTRSHSIISEMQFSSGSSGNSVYKSFQRDNLPDNSDQASVSGISENVNHLSYQDDLRLQIERLRVKLQHLHKLHERAQHESLDTSHTTQKLHKLGTRHIEDEIKLKEIQLTEDTIRRLVRKQEMEEHEAAREAELNRPSDGMEAKQSYDVQEANENEMGKKIAGGSFDEYNRYTWEEIQASTSSFSSALMIGKGSYGTVYKAKFRHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLMMLGACPEHGCLVYEYMENGSLDDMLQCRKNTSPLAWFDRFRIAWEVAAALMFLHSSKPEPIIHRDLKPANILLDSNLVSKIGDVGLSTLLPSMGQYLSTMIKNTAPVGTFCYIDPEYQRTGVLSMKSDVYALGIVLLQLLTARSPMGLAHVVETALEDGCFVDILDATAGQWPLNEAQELAILALRCSEMRRKDRPDLNDHVLPTLERLKDVAAKAREDAFQGHTAPPSHFICPILQEVMIDPYVASDGYTYDRKAIELWLSTNETSPMTNLRLPNKSLIPNHSLRSAILDWRSKSK
Length807
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-0.340
Instability index48.44
Isoelectric point6.23
Molecular weight89529.76
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08735
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.08|      32|      32|     116|     147|       1
---------------------------------------------------------------------------
   79-  105 (38.40/22.03)	...EDVASAYRKE.AEWQASNMLV.PFQKMCA
  116-  147 (51.15/31.58)	LESDDVASAISEEIGKFNICKLVLGSSSKNIF
  151-  180 (48.53/29.62)	LKGSKTATKISECIPSF..CTAYVISKGKLSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.71|      21|      30|     237|     257|       2
---------------------------------------------------------------------------
  237-  257 (34.53/26.69)	DQAL....AIINKLSNRRASSSSSV
  266-  290 (30.18/22.21)	EPALtrshSIISEMQFSSGSSGNSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.11|      18|      18|     327|     344|       3
---------------------------------------------------------------------------
  327-  344 (31.81/22.50)	QIERLRV..KLQHLHKLHER
  346-  365 (26.29/17.34)	QHESLDTshTTQKLHKLGTR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.96|      18|      30|     471|     488|       4
---------------------------------------------------------------------------
  471-  488 (32.63/25.54)	KFRHTVAAVKVLNSPE.GC
  502-  520 (32.33/25.23)	KIRHPHLLMMLGACPEhGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.56|      11|      27|     390|     400|       5
---------------------------------------------------------------------------
  390-  400 (17.88/12.65)	QEMEEHEAARE
  419-  429 (16.68/11.26)	QEANENEMGKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08735 with Med32 domain of Kingdom Viridiplantae
Unable to open file!