<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08728

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMPMIMDDDALDMELFGGGDLSLPARPPPKELYQRLDELRESGCCQSIAWSKWGSIASITANGTAVDLRNLRCHPEDGTWALSEPYKTENFSNSMEGGPLKHLAWAPNGSDLAAIDAAGRVAILSVFSSLNKVALARMIQADPTDDLHAVVGSYWLNLATLPPNRPTILNGPAVKDGTDYRYEASQAPSLGPSHPNHNRSAFIFLTTNGLLRLLFPQNNNKWYEVHTELESIVSSDDLITHAAICADKNNTLLIAFATSSKQLRTVRAVIEWNQPKMDKAAPAQLPVQPQIKTRHLAVTSWYHEGPGIPLNPSHVESSMQQLSRLEFLPPCVDAGGKVVSPTIITFRSHLPISSSHFNQDVYTTVDRWEVRDKHQNIHPAFEQLSSRRNSVGSQPGPTVFLKKIESFTVNKIAIGLEPMNHGKVIFFAYSDGSIEYRDRFDMSETFNDGNLERVWHLSQIGFTYPEDEPCLQIAFSPSYCSIVQLKGDGKVQWQHLDYRLGDLGTSAEDPMYGATIAALSLSIGTAVMRGVNYDDLLATVKKHATPQLIYDLLTDTSRIFKLQADYSEESHHDMLVRNTSIQLCLCLQNSLGFKGEFNPRTFSGRFSWLVLQLRNIVVCVSMAANLNPMGPDKVSPLEDSEVINSLTGSVRWILDLMAWLVDTLLTLPTTVPSTVDLTNASKLSLPDLLAHLHSTNTVALHMLLSSSVRGFLTAICRRLVHLDYIARKAIMLSGGTPSNNLNQQNPSQSPHPISNVTPALRQAYLQIATLTSTTIVKVKTAEALLSSLSSLIKTAYATPPTSSSSTQPVLSGSPQAEKVRNQLEIKMLFGSSFPDAFKTVIVELFRKEGLLETVQEEIEPAQLFFADFTMLEIDEDHASVKKRKNLGRTMDCFLKTWLRNPPSLHSSENGDSQANGSSRQGVKWRRCARCAAVMEDSMSQRPALAWLMMQQRRCFCSGYWDTLPAGQMAA
Length969
PositionTail
OrganismPhialocephala scopiformis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Mollisiaceae> Phialocephala.
Aromaticity0.08
Grand average of hydropathy-0.205
Instability index43.78
Isoelectric point6.27
Molecular weight107266.99
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08728
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.69|      23|      53|      40|      62|       1
---------------------------------------------------------------------------
   40-   62 (45.87/24.58)	ESGCCQSIAWSKWGS.IASITANG
   95-  118 (38.81/19.77)	EGGPLKHLAWAPNGSdLAAIDAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.13|      28|      53|     269|     321|       2
---------------------------------------------------------------------------
  269-  299 (45.61/79.99)	IEWNQPKMDKAAPAqlpVQPQIKT..RHLAVTS
  324-  353 (45.51/19.37)	LEFLPPCVDAGGKV...VSPTIITfrSHLPISS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.83|      38|      52|     605|     642|       3
---------------------------------------------------------------------------
  605-  642 (65.02/38.84)	FSWLVLQLRNIVVCVSMAANLNPMG....PDKVSPLEDSEVI
  656-  697 (57.81/33.74)	MAWLVDTLLTLPTTVPSTVDLTNASklslPDLLAHLHSTNTV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08728 with Med16 domain of Kingdom Fungi
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