Description | Mediator of RNA polymerase II transcription subunit 18 |
Sequence | MYELFMTAFINDIDFDRARSLLSGYCWSEPNTRFYRVIHYDGPNPPKPITKTSNIRGIPPQPDPFMYGLPGAEPLQPQVGPYIDPDWRALSDILKKQSYISHPLNARQGALFWAEIPDPASTAGGQSLILQRNKIEIWDQLNLPAVMADNGFRPKAETVEETHDIYHRDDPMLEFNLVRHYKLPSPKNPSAPEKSSPLPDLDQLEKTDPAGKWILWARVHVLSDDKAPEKIKAARDTLARVRDELRGTGIEFRELDRRVHDTQLAGSGSQAWSTLSEEDEEEEEEMEMEDLQLTLDDWRSSRVRRSRRLAREKREERERERGRECARGTGQIGEGINKGGPGPRDDYAADSGSVAKVGAQEFPEK |
Length | 365 |
Position | Head |
Organism | Valsa mali var. pyri |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Diaporthales> Valsaceae> Valsa. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.865 |
Instability index | 60.34 |
Isoelectric point | 5.21 |
Molecular weight | 41556.95 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364150 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP08694 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 140.07| 34| 35| 250| 284| 1 --------------------------------------------------------------------------- 200- 231 (35.83/17.93) ...DLD.QLEKTDPAGKW.ILWArvhVLSDDKAPEKI 251- 284 (56.23/29.28) EFRELDRRVHDTQLAGSGSQAWS...TLSEEDEEEEE 287- 318 (48.01/27.96) EMEDLQLTLDDWR..SSRVRRSR...RLAREKREERE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 42.11| 11| 22| 113| 123| 2 --------------------------------------------------------------------------- 113- 123 (21.06/13.91) WAEIPDPASTA 138- 148 (21.05/13.91) WDQLNLPAVMA --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FYRVIHY 2) QEFPEK | 34 360 | 40 365 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab