Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MASSSRSPFALRPLPLPQSDRKPTSLADFISRVNADKGGFRNVTEESLRQELEAEAEANDVVESKEVDMLNGESEVDGDAEQISVEDFHEAVNEVRRNAEYDPYPNAMLTVDFISLMLSKEMPSQAGATVSPALRDLVGLGTLGADKLATSNIDDARLRDNKLVATGCKFADIDRTVESVLTSASRLQKEISVETKYWAEVLAVSDKGWSVTRVPNEPETLGVRYGFSEAAPDFRNTSLAPMRRGDDGTVELDCGRMLGDPQRLLVTLEKNGRIVGQSALARPLPQDAPLEDRVLEARNTIFAQELWHEINREGRLLQTYGVRLEDSAVSYSINDDLRVVFALQPLERLVEEGASESLPEDSRAESLAAALHQLLTYAHRINNQKRTRPMPKNRLQSTTTPPYPLLRPVLTNLQHETLTQDVTRFISDLTTVLQSAGVTTALFRLHEPPISLNLAETHGSPSEGLIQALFGPLELQYEMNITPEARLLIHCKSVMSNAIATTYHIYLLPPAQGELNPLQFAYPPVHVHGEGYSLPELKYYIQQAVARALTERASKTLATITPSSPQREDGLQAQWVKHVSGIALENDNDPKERLSFDVVYAKPGTSGVHPELRVHGSWAAAGQQMAATRTWAWTVDDAAQGVQKESVDQVVRDVVARMVQPLA |
Length | 663 |
Position | Head |
Organism | Valsa mali var. pyri |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Diaporthales> Valsaceae> Valsa. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.363 |
Instability index | 45.71 |
Isoelectric point | 5.07 |
Molecular weight | 73202.52 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP08690 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 159.33| 57| 107| 26| 132| 1 --------------------------------------------------------------------------- 26- 86 (82.64/150.56) LADFI..SRVNADKGGFRNVTEESLRQE.LEAEA.EANDVVESKEvDMLNGESEVDgdaEQISVE 134- 194 (76.70/37.69) LRDLVglGTLGADKLATSNIDDARLRDNkLVATGcKFADIDRTVE.SVLTSASRLQ...KEISVE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.33| 15| 269| 6| 21| 2 --------------------------------------------------------------------------- 6- 21 (26.41/19.70) RSPFAlRPLP..LPQSDR 277- 293 (23.91/12.59) QSALA.RPLPqdAPLEDR --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) FALRPL 2) LADFISRV | 9 26 | 14 33 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab