Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MASTTQLSLEPLQPFAGDGHDSDLFARPARLREVRLDDGREVFTRDDPKKSLQERLARVWAERGDYSELSEERILNPAKEHELADKEDKDPRPTVDDIRALQETMINNLALARGELTTALDLLSVLSAPRDPPDVDVASLPLPQQTLSFVPTAPPPRPSTDPQQNPLAPIPLASSLDALSRSARAFFSASEELVPLSDEELAALASSNSAAASRPRPRQRARAPDPWPTILRLHHGGARTLAPLGAGKGASLAAGKGESRTARSVGVFFGAQEAGAAWRRASVAEVGELLDEGAEKRKGRRMVVEVGVEGAGKMERAVWDEEDDKAQDAMDEEEKGDDVDRVERVLKARGRAVFAEELFSQLTSEARSESALRAELQLGSRTEGDTIALSGSGWTVRVTMATTPDSSTPSHATAATLSSLLRLLFLQEYTARRTSTPNSAPRPLLATVAAYLGHAQRVDALRGVLERLRAKACEGEGEVEAAVAFDGEDEGQGAGRQAADVLHVLNGASVLGGRATLRLGKSTVFTVLYSSPLPPSPHAAAQAPPPSLPPSLQPTLTLRVPGRPAPLQLPSLRHLETFLGEQVDRACRVESARREKEREGAGEDKDKEGL |
Length | 610 |
Position | Head |
Organism | Rhodotorula graminis (strain WP1) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.472 |
Instability index | 47.63 |
Isoelectric point | 5.31 |
Molecular weight | 65546.61 |
Publications | PubMed=26441909 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP08675 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 427.64| 121| 140| 289| 427| 1 --------------------------------------------------------------------------- 112- 172 (82.88/31.75) ARGELTTALDLLSVLSAPRDPPDVDVASL..............PLPQQTLSFVPTAPPPR.PSTDPQ...QNPLAPIPL.................................................................................................................................................................. 289- 329 (33.11/ 6.61) ................................................................................assldalsrsaraffsaseelvplsdeelaalassnsaaasrprprqrarapdpwptilrlhhggartlaplgagkgaslaagkgesrtarsvgvffgaqeagaawrrasvaevgeLLDEGAEKRKGRRMVVE....VGVEGAGKMERAVWDEEDDKAQDA 348- 494 (172.59/104.71) ARGRAVFAEELFSQLTSEARSESALRAELQLGSRTEGDTIALSGSGWTVRVTMATTPDSSTPSHATAATLSSLLRLLFLQ.............................................................................................eytarrtstpnsaprpllatvaaYLGH.AQRVDALRGVLErlraKACEGEGEVEAAVAFDGEDEGQGA 495- 603 (139.05/64.78) ..GRQ..AADVLHVLNGA..SVLGGRATLRLGKSTVFTVLYSSPLPPSPHAAAQAPPPSLPPSLQPTLTLRVPGRPAPLQ.......................................................................................................lpslrhletflgeQVDRACRVESARR...E....KEREGAGE................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 58.64| 18| 121| 56| 93| 2 --------------------------------------------------------------------------- 9- 28 (29.59/25.01) LEPLQPFA.GDGHDSDlfARP 75- 93 (29.04/ 8.07) LNPAKEHElADKEDKD..PRP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 80.08| 27| 46| 184| 214| 3 --------------------------------------------------------------------------- 184- 210 (43.23/18.40) RA..........FFSASEELVPLSDEELAALASSNSA 222- 258 (36.85/18.08) RApdpwptilrlHHGGARTLAPLGAGKGASLAAGKGE --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DLFARPARLREVRLDDGRE 2) ILRLHH | 23 230 | 41 235 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab