<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08663

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSQVTKAPEEQIAQAMSMNASGPAPSALRVTVPPELQGVAFISVLCQKEQEDVVTATLSSSALNCPGTLPGDGAELHWQQKLEAAQNVLFCKELFARLAAEAVQLDASIPHMVVGNQIMATVLPGIQLLIGLCHNNGQNNNNPDGIKSEGSSGKSEHDHVLEHSLHQLLRTVHHNNTHHPFPHPATGPLGPSKRRSLAGPMAADRYELLDMSKEQSLLEQIIQQAQHFFMRRRSEYVLDTIAKEVGDRMIAIRCEPSVGIQVYIAQSPRKDFFASELVQDKKWENLGGAFKEIKLEKMEGKNFLNKMELLMACLSSPS
Length318
PositionHead
OrganismPapilio machaon (Old World swallowtail butterfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Papilionoidea> Papilionidae> Papilioninae> Papilio.
Aromaticity0.05
Grand average of hydropathy-0.285
Instability index50.54
Isoelectric point6.11
Molecular weight34939.61
Publications
PubMed=26354079

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08663
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.28|      28|      39|     127|     157|       1
---------------------------------------------------------------------------
  127-  157 (46.26/30.88)	QLLIGLCHNNGQnnnNPDGIKSEGSSGKSEH
  167-  194 (55.03/29.46)	QLLRTVHHNNTH...HPFPHPATGPLGPSKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.68|      26|      40|     234|     259|       2
---------------------------------------------------------------------------
  234-  259 (44.32/44.85)	SEYVLDTIAKEVGDRMIAIRCEPSVG
  275-  300 (44.36/44.89)	SELVQDKKWENLGGAFKEIKLEKMEG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08663 with Med17 domain of Kingdom Metazoa
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