<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08656

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSFSIDEVNFIVYRYLQESGFHHSAYTFGIESHISQSNINGALVPPAALLNILQKGLLYTEAEITIGENGTETRLTESLSLIDAVTPDAVANRQNAHNAQKQAIKEPSSGGEQNGVDVCIKTDTTTTCSTAPTPTGVPTPSAPETMDVDQSIEIPASKATVLSGHESEVFICAWNPSTDLLASGSGDSTARIWDMSDNPATTPNQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGNLLATGSYDGYARIWATDGTLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCRLHVDKPIKSFQGHTNEVNAIKWDPQGQLLASCSDDKTLKIWSMKQDTCVHDLEAHSKEIYTIKWSPTGPGTQNPNMNLILASASFDSTVRLWDVERGVCIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQTGSLVHSYKGTGGIFEVCWNSRGTKVGASASDGNVFVLDLRKL
Length512
PositionTail
OrganismPapilio machaon (Old World swallowtail butterfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Papilionoidea> Papilionidae> Papilioninae> Papilio.
Aromaticity0.08
Grand average of hydropathy-0.271
Instability index33.89
Isoelectric point5.40
Molecular weight55408.22
Publications
PubMed=26354079

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08656
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     385.86|      40|      40|     319|     358|       1
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  162-  200 (53.82/23.52)	..LSGHESEVFICA......WNPST.........dlL.ASGSGDS...........TARIWDMS.DNPA
  210-  256 (52.15/22.60)	HCIQKGGAEVPSNKdvtsldWNCDG.........nlL.ATGSYDG...........YARIWATD.GTLA
  257-  298 (54.26/23.76)	STLGQHKGPIFALK......WNKRG.........nyI.LSAGVDK...........TTIIWDAASGQCT
  299-  339 (49.25/21.01)	QQFSFHSAPALDVD......W..........qtntsF.ASCSTDQ...........CIHVCRLHVDKPI
  340-  381 (63.56/28.85)	KSFQGHTNEVNAIK......WDPQG.........qlL.ASCSDDK...........TLKIWSMKQDTCV
  382-  433 (26.71/ 8.67)	HDLEAHSKEIYTIK......WSPTGpgtqnpnmnliL.ASASFDStvrlwdvergvCIH..........
  434-  474 (52.83/22.97)	.TLTKHTEPVYSVA......FSPDG..........kFlASGSFDK...........CVHIWSTQTGSLV
  475-  509 (33.27/12.26)	HSYKG.TGGIFEVC......WNSRG.........tkV.GASASDG...........NVFVLDL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.69|      22|      40|      29|      51|       2
---------------------------------------------------------------------------
   29-   51 (33.80/29.35)	GIESHISQS.NINGAlVPPAALLN
   70-   92 (31.89/22.09)	GTETRLTESlSLIDA.VTPDAVAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08656 with Med16 domain of Kingdom Metazoa
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