<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08616

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSFSIDEVNFIVYRYLQESGFHHSAYTFGIESHISQSNINGALVPPAALLNILQKGLLYTEAEITIGENGTETRLTESLSLIDAVTPDAVANRQNAHNAQKQAIKEPSSGGEQNGVDVCIKTDTTTTCSAAPTPTGVPTPSAPETMDVDQSIEIPASKATVLSGHESEVFICAWNPSTDLLASGSGDSTARIWDMSDNPATTPNQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGNLLATGSYDGYARIWATDGTLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCTQQFSFHSAPALDVDWQTNNSFASCSTDQCIHVCRLHVDKPIKSFQGHTNEVNAIKWDPQGQLLASCSDDKTLKIWSMKQDTCVHDLEAHSKEIYTIKWSPTGPGTQNPNMNLILASASFDSTVRLWDVERGVCIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQTGSLVHSYKGTGGIFEVCWNSRGTKVGASASDGNVFVLDLRKL
Length512
PositionTail
OrganismPapilio xuthus (Asian swallowtail butterfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Papilionoidea> Papilionidae> Papilioninae> Papilio.
Aromaticity0.08
Grand average of hydropathy-0.272
Instability index34.05
Isoelectric point5.40
Molecular weight55391.20
Publications
PubMed=26354079

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08616
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     292.00|      33|      39|     230|     262|       1
---------------------------------------------------------------------------
  159-  199 (49.31/30.99)	ATVLSG................HesevficaWNPST........DL.LASGSGDSTARI..W.D.MS.DNP
  200-  255 (42.05/25.24)	ATTPNQlvlrhciqkggaevpsN.kdvtsldWNCDG........NL.LATGSYDGYARI..W.A.TD.GTL
  256-  297 (42.03/25.22)	ASTLGQ................HkgpifalkWNKRG........NY.ILSAGVDKTTII..WdA.AS.GQC
  298-  339 (33.46/18.43)	TQQFSF................HsapaldvdWQTN.........NS.FASCSTDQCIHVcrL.H.VD.KPI
  340-  380 (45.27/27.79)	KSFQG.................HtnevnaikWDPQG........QL.LASCSDDKTLKI..W.SmKQ.DTC
  381-  431 (34.21/19.02)	VHDLEA................HskeiytikWSPTGpgtqnpnmNLiLASASFDSTVRL..W.D.VErGVC
  432-  473 (45.66/28.10)	IHTLTK................HtepvysvaFSPDG........KF.LASGSFDKCVHI..W.S.TQtGSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.69|      22|      40|      29|      51|       2
---------------------------------------------------------------------------
   29-   51 (33.80/28.31)	GIESHISQS.NINGAlVPPAALLN
   70-   92 (31.89/21.33)	GTETRLTESlSLIDA.VTPDAVAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08616 with Med16 domain of Kingdom Metazoa
Unable to open file!