<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08596

Description Uncharacterized protein
SequenceMTTDVSNVNFTSGNPYSPDVKVGVSEYSGLTDDPSCTALEMNTHSGLLHSLNGSVVNSTGTFNRNVGLIAHRGVSLASSTGSGHIGPAELALMLPTPPSHDAPQPSPVDGISAVTNRVNTSTNSVSTPGPGSPSVQTVLDPSSSVASDIPCHPNSLAYQPANSPQIFQNQGLYHLAKQPCIQHLSCISTESQDWSFLHPYASYLGMTSNYQIPHEEISSFAKSLPQMKWSYDHRVSSQKSVTSECSDPHNTNNALNINTTSNPPVSSKSWLVSPNQLPSASLHRNATSIDNKSCSPQQLNESINTCPVVGFVKSADSMNQNGNYKEEFAEWLASLRETSGLLVNLILSDSMLNLFKDHNFDSCNICECTSSILGSEIGLYLSNSTTVSSPCNRSARTSTSAFGHDLVGGSGFHFTRGCKCGFSAVMNQKYVVNGNLFYEDEIEVTRLSVRFAAGQNTENLYSRRPNYRRRPGWWLTGPQPSVSHLLLLQQIMSNVFEEFSVRQVTDLLRWNMLSRDQLIMENTLEYDGKLKVN
Length533
PositionMiddle
OrganismTrichobilharzia regenti (Nasal bird schistosome)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Trichobilharzia.
Aromaticity0.07
Grand average of hydropathy-0.370
Instability index52.10
Isoelectric point5.92
Molecular weight58088.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08596
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      23|      28|     235|     262|       1
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  235-  261 (34.51/25.94)	VSSQKSVTSecsdPHNTNNA.LNINTTS
  265-  288 (37.06/14.43)	VSSKSWLVS....PNQLPSAsLHRNATS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.42|      27|      28|      98|     124|       2
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   98-  124 (48.05/21.94)	PSHDAPQPSPV.DGISAVTNRVNTSTNS
  128-  155 (46.36/20.94)	PGPGSPSVQTVlDPSSSVASDIPCHPNS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.79|      18|      32|     181|     198|       3
---------------------------------------------------------------------------
  181-  198 (34.98/20.04)	IQH..LSCI..STESQDWSFLH
  212-  233 (26.81/13.82)	IPHeeISSFakSLPQMKWSYDH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.31|      47|     140|     309|     357|       4
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  309-  357 (74.35/56.62)	VGFVKSADSMN...QNGNYKEEFAEWLASLRETSGLLvnLILSDSMLNLFKD
  449-  498 (80.96/55.36)	VRFAAGQNTENlysRRPNYRRRPGWWLTGPQPSVSHL..LLLQQIMSNVFEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.97|      13|      14|      18|      30|       5
---------------------------------------------------------------------------
   18-   30 (22.35/11.85)	PD.VKVGVSEYSGL
   34-   47 (18.62/ 8.79)	PScTALEMNTHSGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08596 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GPAELALMLPTPPSHDAPQPSPVDGISAVTNRVNTSTNSVSTPGPGSPSVQTVLDPSSS
86
144










Molecular Recognition Features






MoRF SequenceStartStop




NANANA