<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08578

Description Uncharacterized protein
SequenceMWYGTLKLWIKLDWSILKFARSIQAPDCVIYGFCSALTSPTLSQTQPGCNSLHSVSNSVCISQQQPLNVTLQPGTALLTNTGGSGGASVSIPLGRTLLPLNSSMNSISSASIVQPSNDTMISSNSGVNSLASSSGNSAFPNAIPGYPFLMYDNVEVDRFILFSLLQMYHTFDLEEVSGIRPNLVEQVRSMCEQCGASSLVDLPQIITSRLPDFLILVIRQLTNPTGGEFSSSTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANTESMESSLPYTDKSTSLSKLCSMLQEEIAGYLTPTPLPSVLFRLGFFKQRIDTTNQILLGLNTSFKRVIIIFDNCDLRLYLLSSSDFNFFVMSSLLFRYFMEHQSVPGKAASLINRLSTKYLSRQLRMLCDYVVACMTFTAQVNFASEKPSPSNESMVQRKSPHSDPLSSRDWFSCVLTLHEIIPDQWITHPKLCTVLSGDNDYRDSVEDMDRPPHLPVFYGHLLLRLLPLLEVILIQFLTCQVPLVLLIPFCRVIAPLFRYHRRPVNVCFTLLHDHIEFNRKNLISKLPSQMYTSLHQTQSNGDYTGSSVAKYPRESDGDKIPWIIDRLSCQLVVHCVLRKHQQLAVKSASIRASKRFSQKCTPTHGLFSCQGWHQLDSCVKQSEIFYDLICNNIDTAGDDGDNKTIDIEKLNINIILNSKSYEVQLRNTYANWYNFNMPQLNNSDYLFELIDPICKSKRIPS
Length730
PositionTail
OrganismTrichobilharzia regenti (Nasal bird schistosome)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Trichobilharzia.
Aromaticity0.09
Grand average of hydropathy-0.063
Instability index47.83
Isoelectric point7.20
Molecular weight78705.50
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08578
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     361.34|     117|     171|     278|     398|       1
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  278-  398 (197.13/143.79)	DKSTSLSKL..................CSMLQEEIA..GYLTPTPLPSVLFRLGFFKQRIDTTN..........QILLGLNTSFKRVIIIFDNCDLRLYLLsssdFNFFVMSSLLFRY........F.MEHQSVPGKAASLINRLSTK.YLS.RQLRMLCDY
  415-  572 (164.21/110.85)	KPSPSNESMvqrksphsdplssrdwfsCVLTLHEIIpdQWITHPKLCTVLSGDNDYRDSVEDMDrpphlpvfygHLLLRLLPLLEVILIQFLTCQVPLVLL....IPFCRVIAPLFRYhrrpvnvcFtLLHDHIEFNRKNLISKLPSQmYTSlHQTQSNGDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.65|      20|      24|      88|     111|       2
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   92-  111 (34.89/23.84)	PLGRTLLPLNSSMNSISSAS
  115-  134 (34.76/14.77)	PSNDTMISSNSGVNSLASSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08578 with Med23 domain of Kingdom Metazoa
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