<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08574

Description Uncharacterized protein
SequenceLILELQLGVSRQAPRLMDPKLPPIINRRLLALDFNFRPVAAAAAGESSAFFAGSSGSRSTTDQTFVGSDFTGNTSATDGANSTSQLVNTALEEYRSRIIQEGISELLIPPYGNAPGVAYTNRLTSFSPSLARPVPFPLSCLHFVLGIESRISECILTTFSLPYSLHLCFHYSAVIASSVSTVCQQVKVLADFLVEIICLGVQSENVDSAKPAPPYAPSAVLQGLLAFCIKYRVVPLDRILLSLLLRSSQLTEEIAAVHSVFFFVFSQCSELRAAIKKISEVGSARAPTSNTAVQDGAKRRSLPCPSLISSSRWQDLLNYLHSIIPEQSVQLPGMDEPEIRQPRMPVYFDHLILRLLPILEIFFTSCLDHPPPLLQLARFCNIISPLMLLHHRPVNLSFILLRGQFQQFGSPVPISATLPKVLSSRKSNLIDKVCCQLIIRSLLHEHQQLAVCTNRALRRDCAMRFADLGVAGLFSPPAWNHLESVFDCAVAKAEARITSAAAAAATYSDADFAVCLRTTGQVTEHELHLAQEIDQSAGAWHPTADYMFALLSPIVASKYHPL
Length562
PositionTail
OrganismSchistocephalus solidus (Tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Diphyllobothriidea> Diphyllobothriidae> Schistocephalus.
Aromaticity0.08
Grand average of hydropathy0.215
Instability index60.15
Isoelectric point7.31
Molecular weight61531.43
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08574
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.08|      18|      25|     135|     152|       1
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  135-  152 (34.18/21.43)	PFPLS.CLHFVLGIESRIS
  162-  180 (29.91/17.85)	PYSLHlCFHYSAVIASSVS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     247.07|      85|     214|      23|     116|       2
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   23-  116 (132.87/131.12)	PiINRRLLALDFNFRPVAAAAAGESSAF...FAGSSGSRSTTDQ.TFVGSDF..TGNTSATDGANSTS....QLVNTA....LEEYRSRIIQEGISELlippygnaPG
  235-  333 (114.20/89.01)	P.LDRILLSLLLRSSQLTEEIAAVHSVFffvFSQCSELRAAIKKiSEVGSARapTSNTAVQDGAKRRSlpcpSLISSSrwqdLLNYLHSIIPEQSVQL........PG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.05|      14|      18|     348|     361|       3
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  348-  361 (23.89/15.68)	FDH..LILRLLPILEI
  367-  382 (21.16/12.98)	LDHppPLLQLARFCNI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.06|      24|      24|     475|     498|       4
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  460-  486 (39.11/25.74)	DCAMRFADlgvAGLFSPPAWNHLESVF
  487-  510 (37.95/24.76)	DCAVAKAE...ARITSAAAAAATYSDA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08574 with Med23 domain of Kingdom Metazoa
Unable to open file!