<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08567

Description Uncharacterized protein
SequenceMVPITGITLATSPGFQLNIDNLTFVSLKNAKLYPTNMNTNQLPLLCSVLGQLRCRSLVMGILENITASTPQQRMNSRGLEVALPNLIVQLMEITEKQERLDWVLSTFEHLADVVVQFVSDCNIHLSQVLIDLNSKLADRRWPKSRNYVMWFALNITSGFIEKNKLTDFVPCLRLFDILYPEAEDLQLVDSCADEQSRAKRPRLAESPSTDGVGDDDDGGGGTKGDIEAEDEDVCWPDEAFSSEESEDSDDEFAFFSAHVATYRKYRLHQVILLNKPLADIPVSPAFTNTSRQLLTSEPHLGDDEAVICPTIGIADCLGYQHVLSISPPDENIVQQLSAPRPRVHPRGLLPHRKAEEGVGQQETVFRPRSQKEAAFVTATETMGTQHSLPGGVVFLDTGVEPQLPRRCRRRRRRRRRHTAHLIAAPACQWLQVMQNSRLHRSHLPRSMPPALSPLESQLSKYFSYLTNTSASAPPSDMGQLTWSKLLVTLNAYSADERCGELIGILVKNFWPDAPLAMAGTNAPAHQQSVQLQKFSGLFENALVRLPYGVVASGPVKPLPNHLVRMMSIYLRFLIFVSLLELINLKSGQVATPASLETFCRLFSAHGLLTHRAQPQCREPCVVSVRLQTVVAVVELAENSNYADFDYLACQEVSLRPLIEKKCFAIPLYRSALENPTSVAPAAVVSSAADDNAGVAEQHEHHQEHHHQQQQIPAEPPEDAVXLPSAADDDAGVAEQHEHHQEHHHQQLQIPAEPPEDAVNSLVSAITLIDMIGHRLTKDPLIYLGNILRLPHYRKQFFARTQQQMGAEGSLSSEQLSSSASEGELPQELAYMLDWTALKMSRNILVPDCILYDLFEQVTLALAEESRSVSQAALGNRPPISESSSVLPIFTGREEMNRVVLLSLVQAILAYDLIEVNGLRLILELQLGVSRQAPRLMDPKLPPIINRRLLALDFNFRPVAAAAAGESSAFFAGSSGSRSTTDQTFVGSDFTGNTSATDGANSTSQLVNTALEEYRSRII
Length1018
PositionTail
OrganismSchistocephalus solidus (Tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Diphyllobothriidea> Diphyllobothriidae> Schistocephalus.
Aromaticity0.06
Grand average of hydropathy-0.195
Instability index57.18
Isoelectric point5.52
Molecular weight112534.53
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08567
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.00|      35|      36|     686|     720|       1
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  686-  720 (77.24/46.04)	SAADDNAGVAEQHEHHQEHHHQQQQIPAEPPEDAV
  724-  758 (76.76/45.71)	SAADDDAGVAEQHEHHQEHHHQQLQIPAEPPEDAV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.07|      74|     357|     451|     536|       2
---------------------------------------------------------------------------
  451-  536 (114.05/107.69)	LSPleSQLSkyfsyltnTSASAP..PSDMG.QLTWSKLLVTLNAYSADerC.....GELIGILVKNFWPDAPLAMAGTNAPAHQQSVQLQKFSG
  810-  891 (110.02/74.87)	LSS..EQLS........SSASEGelPQELAyMLDWTALKMSRNILVPD..CilydlFEQVTLALAEESRSVSQAALGNRPPISESSSVLPIFTG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     222.88|      78|     357|     226|     327|       3
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  226-  327 (116.84/105.02)	IEAEDEDVCWPD..EAFSSeesedsddefaFFSAH.VATYR...........KYRLHQVILLNKpLADIPVSPAFtntsrqlltsePHLGDDEAVICPTIGiADCLG...YQHVL....SISP
  582-  680 (106.03/57.32)	INLKSGQVATPAslETFCR...........LFSAHgLLTHRaqpqcrepcvvSVRLQTVVAVVE.LAENSNYADF...........DYLACQEVSLRPLIE.KKCFAiplYRSALenptSVAP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.04|      19|     154|     388|     409|       4
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  388-  409 (29.37/27.42)	LPGGVVflDTG.VEPqLPRRCRR
  545-  564 (32.68/18.32)	LPYGVV..ASGpVKP.LPNHLVR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.40|      40|     730|     161|     203|       5
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  161-  203 (59.70/55.83)	EKNK..LTDFVPCLRLFDILypEAEDLQLVDSCADEQSRaKRPRL
  894-  935 (59.70/42.36)	EMNRvvLLSLVQAILAYDLI..EVNGLRLILELQLGVSR.QAPRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08567 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKRPRLAESPSTDGVGDDDDGGGGTKGDIEA
2) APAAVVSSAADDNAGVAEQHEHHQEHHHQQQQIPAEPPEDAVXLPSAADDDAGVAEQHEHHQEHHHQQLQIPAEPPE
3) ENIVQQLSAPRPRVHPRGLLPHRKAEEGVGQQETVFRPRSQKEAAFVTATETM
198
679
330
228
755
382










Molecular Recognition Features






MoRF SequenceStartStop




NANANA