<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08566

Description Uncharacterized protein
SequenceMTHVVEKNLEPFSEPSSFPKSPNNNDRPVSWPNNFSATSESSLFAAPTEAQSPPRPVSNPSFPSGTRSDSYPNMSLLTKTGLSETPNLLLSEVSPKTNLAALGTDNLPTDASPVVGPFPHTSLPNGQPAQPAWDAQTAIGCDTATPNFFETDSTLESPSICDTTLPGPDFLDFIKPEQPFHTAQSADSTIPKPQSFLDSSIDGSDIFSPLQQSVDSSSRSSPTPVCKLSFPSASPSENLIGPLSVGDSELCPTACMENACPELLEVKEKNLFPLQNTTPFTPSSKSDAPVAVFKTLPDQQSLTGDLSGSSSVPTVSDSNTLKANPKVPESLSSPADFFPEYEIPKSVNVMSPNSNKSSETSPAQSHSFASRPSPAGSNSNGIAKGFSNSKRRRLTFFKTVREYVATLRPVDCVIMVEKCRPFNSKTEHMEYFKNNCLQPILDCLNGGPPLDADFGRDAYTSLYSLHDFDWRHPFPATTLAKDTPKIYRILQCFDSIRHSEKHAPEGTPEFRGTPAIPLLRAALQGFEAIDKVRRGLCPVVFRHLILLALSPVALGPLKAEATALSTGAAVIEEGDSGVLAELRKRKVAVSVFSPVSLPSLRRLADLVNTLPPKPRKDSRWPTMVFSRELADWASRYEKRHGMAPSPPPCQTSRRPTDSNNNSITSPLSASVMQNGICARTNFQPSVSLTHHLSNEATLSPQQYREVAARCGCVLLTGARTKGCVPSWPPITRPLTDEDEEVAFVLSLSLSLGRRTRPVARLQTNHSLPAPSLNSSGPNSIEQAPGNLIGPDMATTPGNFSVSPADVGGGGGFPIYQQSSLAQPSPRSIGGQIPGDVLSSRGGLPPSVQTTSPMLSTLEQNYVDISTYDRYQREGSARLTGGPLSVPTSNFSMPPSGMSPVSDPFLRVSRSSTASPMRAGPGGGNIEAVGLSSAVGSNRGSSESLHEAQQKRMQSLNDPTTTTTTLCVGTTGSSHQQHVPLGPTRKPPVGTTTTPYAVSQSPGSNGGQLYNGPPSQQAYPPGDVPPDTRRPPDDNGRTVGPNQRLVTSSPI
Length1050
PositionUnknown
OrganismSchistocephalus solidus (Tapeworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Cestoda> Eucestoda> Diphyllobothriidea> Diphyllobothriidae> Schistocephalus.
Aromaticity0.06
Grand average of hydropathy-0.452
Instability index65.30
Isoelectric point6.41
Molecular weight111978.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08566
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.29|      24|      30|     958|     985|       1
---------------------------------------------------------------------------
  958-  981 (44.56/15.22)	P.TTTTTTLCVGTTGSSHQQHVPLG
  987- 1011 (40.74/18.34)	PvGTTTTPYAVSQSPGSNGGQLYNG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     146.31|      30|      30|     184|     213|       2
---------------------------------------------------------------------------
  152-  178 (24.82/ 8.07)	...DSTLESP....SICDTTLPGPDFLdfiKPEQ..
  184-  213 (51.37/25.55)	QSADSTIPKP...QSFLDSSIDGSDIF...SPLQQS
  215-  244 (38.15/16.85)	DSSSRSSPTPvckLSF.PSASPSENLI...GPL..S
  254-  276 (31.98/12.79)	ACMENACPE......LLE..VKEKNLF....PLQN.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.85|      11|      37|     612|     622|       3
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  612-  622 (24.24/11.20)	PKPRKDSRWPT
  646-  656 (24.61/11.49)	PPPCQTSRRPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.79|      32|      32|     782|     813|       4
---------------------------------------------------------------------------
  782-  807 (39.48/13.11)	................................QAPGN..LIGPDMATTPGNFSVSPADV.G
  808-  838 (42.89/14.88)	GGGGFP........................iyQ.QSS..LAQPSPRSIGGQI...PGDVlS
  839-  898 (38.42/12.55)	SRGGLPpsvqttspmlstleqnyvdistydryQREGSarLTGGPLSVPTSNFSMPPSGM.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.47|      35|      42|      11|      52|       5
---------------------------------------------------------------------------
   11-   49 (58.53/42.76)	PFSEPsSFPKSPNNNDRPVSWPNNFSATSESSLfaaPTE
   56-   82 (44.24/22.39)	PVSNP.SFP.SGTRSD...SYP.NMSLLTKTGL......
   84-  110 (35.69/15.57)	.........ETPNLLLSEVSPKTNLAALGTDNL...PTD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.78|      18|      27|     449|     472|       6
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  449-  469 (28.62/37.30)	PLDA.DFGRDA...YTSLYSlhdFD
  473-  494 (25.17/10.55)	PFPAtTLAKDTpkiYRILQC...FD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.78|      20|      32|     388|     412|       7
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  388-  412 (31.32/37.31)	NSKRRRLTFFKTvreyvATLRPV.DC
  423-  443 (36.47/27.57)	NSKTEHMEYFKN.....NCLQPIlDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.42|      37|      43|     522|     561|       8
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  522-  558 (63.00/49.84)	ALQ.GFEAIDKVRRG.LCPVVFRHLILLALSPVALGPLK
  563-  601 (50.42/30.38)	ALStGAAVIEEGDSGvLAELRKRKVAVSVFSPVSLPSLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.80|      19|      27|     319|     344|       9
---------------------------------------------------------------------------
  295-  313 (29.12/ 7.37)	TL......PDQQSLTGDLSGSSSVP
  320-  344 (28.69/20.83)	TLkanpkvPESLSSPADFFPEYEIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.10|      17|      32|     705|     721|      10
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  705-  721 (30.34/19.05)	EVAARCGCVLLTGARTK
  740-  756 (27.75/16.81)	EVAFVLSLSLSLGRRTR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      15|     581|     356|     387|      11
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  371-  387 (23.96/ 7.60)	RPSPAGSNSNGIakGFS
  917-  931 (27.44/12.32)	RAGPGGGNIEAV..GLS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.15|      13|      25|     111|     125|      15
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  111-  125 (19.83/16.74)	ASPVVGpfPHTSLPN
  135-  147 (24.33/12.26)	AQTAIG..CDTATPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08566 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGFPIYQQSSLAQPSPRSIGGQIPGDVLSSRGGLPPSVQTTSPMLSTLEQNYVDISTYDRYQREGSARLTGGPLSVPTSNFSMPPSGMSPVSDPFLRVSRSSTASPMRAGPGGGNIEAVGLSSAVGSNRGSSESLHEAQQKRMQSLNDPTTTTTTLCVGTTGSSHQQHVPLGPTRKPPVGTTTTPYAVSQSPGSNGGQLYNGPPSQQAYPPGDVPPDTRRPPDDNGRTVGPNQRLVTSSPI
2) MTHVVEKNLEPFSEPSSFPKSPNNNDRPVSWPNNFSATSESSLFAAPTEAQSPPRPVSNPSFPSGTRSDSYPNMSLLTKTGLSETPNLLLSEVSPKTNLAALGTDNLPTDASPVVGPFPHTSLPNGQPAQPAWDAQTA
3) NVMSPNSNKSSETSPAQSHSFASRPSPAGSNSNGIAK
4) SSKSDAPVAVFKTLPDQQSLTGDLSGSSSVPTVSDSNTLKANPKVPE
5) TRPVARLQTNHSLPAPSLNSSGPNSIEQAPGNLIGPDMATTPGNFSVSPADVGG
6) YEKRHGMAPSPPPCQTSRRPTDSNNNSITSP
810
1
348
283
755
636
1050
138
384
329
808
666










Molecular Recognition Features






MoRF SequenceStartStop




NANANA