<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08541

Description Uncharacterized protein
SequenceMEALLNSSHGPGLLNVEFIESDINSLPTPLLEFIFHKQQISSCSRDPLPINQRQKLFKAQRLLACREILSMLSCEASTSKEYNHLTGSVAFATQDKIIATLFPGVQICLSSVVRPTVFGEDVLGDERPKLQDKKLPDHTVFTMDYSNCINLQLHRMLTGQHRAVWPNLASLPQPACGPVEIPLYYRSGGANGLPASRFSSLSHSTKFSGFSVAVASVSGFASQAASALCVIHATNRINANSVEKTTTFSQRSQPIFAGQDRLSLFTEWGHSLPAGTCVPPVGFRHGVPNSADDSVPGTSDIAMLEYNLLSRGVDEDTMKTVLGTNPSLLSRTIAISRHHYLRDQVYSIISELSQCSPIKIIAHWDTFNSATETSVRLCFYCTDYDAYRSWLGVTITPNGLVVLYADPPRTYRLGMDLSRLKDVLSNQVLYTQMNYIDILAIKILGWVRLGNNPFSAVANPEEIGDGPVIVKMFASPSAKYLICLRASAVMNIRMFVSRCSPCDYQFTTDHKDIFSNQDFREVFLSHMYGKSLVSKVEALMTLLS
Length544
PositionHead
OrganismSchistosoma rodhaini
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.09
Grand average of hydropathy-0.022
Instability index40.17
Isoelectric point7.21
Molecular weight60143.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08541
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.15|      27|     142|     341|     367|       1
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  341-  367 (50.26/33.79)	LR.DQVYSIISELSQCSPIK...IIAHWDTF
  484-  514 (41.88/27.01)	LRaSAVMNIRMFVSRCSPCDyqfTTDHKDIF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.71|      94|     126|      59|     183|       2
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   22-  145 (134.27/123.02)	DINSLPTPllefifhkqqisSCSRDPLPInqrqklfkAQRLLACReiLSMLSCEASTSKeYNHLTGSVA.....................................FATQDKIiaTLFP..GVQICLSSVVRPTVFGEDVlgderPKLQDKKLPDHTVFTM.DY
  167-  306 (135.44/67.72)	NLASLPQP............ACGPVEIPL..yyrsggANGLPASR..FSSLSHSTKFSG.FSVAVASVSgfasqaasalcvihatnrinansvektttfsqrsqpiFAGQDRL..SLFTewGHSLPAGTCVPPVGFRHGV.....PNSADDSVPGTSDIAMlEY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08541 with Med17 domain of Kingdom Metazoa
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