<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08533

Description Uncharacterized protein
SequenceMNITTNLQGVLVFNSEINPASGHLNETGLFLQVTHFTSLIADTVWSNNPSTTLEQLCACIKKAQSTIVNQRSTRLNELLNKLKLSHAIDSESVYNDAVVTRKSMRLFEPQATVPTLARLIGTLEENILTNYLTVEVSFFKGIIPFDPPSWHPSDIIPLVDFVHEMILRPHFDPFTHRRSWQLDIVFTGIVAPLNGINQKSSTYLRHQTAEWTVARLEHFNIVVQNILVEWEKLCLMHALCYHVITNPDVYLPKGAQVYSYNLRTLSLIYGTYYLADISNPTGHKFTLALGFRPTSLINSSDTTRELNSDDINMSNTINVDFNPHMIARQHLEEFHFPVLHSLSLKMVSSSKLFRSSIQFVEDGNTYSLS
Length369
PositionTail
OrganismSchistosoma rodhaini
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.09
Grand average of hydropathy-0.064
Instability index35.78
Isoelectric point6.23
Molecular weight41906.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08533
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.57|      15|      20|      47|      61|       1
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   47-   61 (27.81/19.75)	NNPSTTLEQLCACIK
   69-   83 (24.76/16.85)	NQRSTRLNELLNKLK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.83|      18|      20|     264|     281|       2
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  264-  281 (31.59/20.37)	TLSLIYGTYYLADISNPT
  286-  303 (30.24/19.22)	TLALGFRPTSLINSSDTT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.97|      10|      20|     160|     169|       3
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  160-  169 (19.23/12.88)	DFVHEMILRP
  183-  192 (17.74/11.39)	DIVFTGIVAP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.08|      53|     102|      99|     152|       4
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   99-  152 (89.35/59.97)	VTRKSMRLFEPQATVPTLARL..IGTLEENILTNY..LTVEVSFFKGIIPfDPPSWHP
  196-  252 (84.73/51.92)	INQKSSTYLRHQTAEWTVARLehFNIVVQNILVEWekLCLMHALCYHVIT.NPDVYLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08533 with Med14 domain of Kingdom Metazoa
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