<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08529

Description Uncharacterized protein
SequenceMSSMSQSTGPNDASLEHCFTNIFALTDFSGIQYRKYILHTPKEYHDPLNDPIIKSYTLCQKYGVLSAWVRSKPESSDLSNPCAFSKFAKELWVFWYGNDDFPNADSCILPELRREDHGNWRQGLSYETRTVLFRALHNVVERCLLTKGFVRLGKWFVQPRKCGCNDDNVQYSVSFSFFLHGESTVCASLDIRQHAAVQRVGVEHIQSCIASQSTIPVILAPYGISAKLTGFGFEKKDGDLMVESEAWSTFYPLKSSHECDPAMSGVTGLPFFAMATPTHQNPRQQNKFSSDKKRTVEEINRRFPDTPPKFVEVIVDGFRMRYPMCFVLITSVNDSPSQSDYNPTPYDEAIHLSDVSGHNLSTNVSAPYMSNKCSMYNAHIPNKMKTSRFWRVNKRRKRPSIKMNTPGTSLLKSIIPSSSLQSDFLVDVRHIYLAGRTLQCASQHNRLPSMKPEWQSKRSRSTDKSDMSCSTDGLTTSVSPEMCSLYIQDPCTILQCCCNRFSRVRRTSVGGSFHQQDPFIRRSLKSSIHFNVPPCDRPRTPLSMITTNLTATHDPSMPTLSPQQPAPNQNSNLSSNTLNELNNDLACDQNTSQTTPSSTHLSTAPQPPSLLPKPESNSDLSSVVKIPNGLVTTDSPVSSDHQTQYAKMSARHIPIASVSVMKRDLFNTWLARHAAQELQKESSSDIKRPNLCLNIPDRIEREQCICPEGITLQSTIEQSSPSFPNYSIVEDNTLYKENNVTTDEYSFRNKRLRTAICRTDFNECSLNDGAQGITTDITNVNFTSANSYSPDMKVGVTECNGLIDDQHINPGGSETNSHSGLMHSNGSIMNNSSGTFSRNVGLITHRGVSLASSTGSGPIGPAELALMLPTPPSHDAPQPSPVDGVSVSTNRMNPSTTSVSTPGPGSPSVQTIQDSLSSSVTDTSSHSIPVPFQSVNSPSSCQNQGLWHLAKLPCIQNLGSVSMESQDWSFVQPCAAYLGMTSNYQIPHDEISSFSKSLPQLKWSYDHRASNQKSVSSDCVDPHFTPNGLIVNTGNQSTTSKSWLMSPNSFPPTSLHRNVTNTNNKPCSPQQLNESGTTCPITGFVKSADCTNPNTSYVEDFTEWLSSLLETNGLLVNLILSDSMLNLFKDHNFDSCNICECTSSILGSEIGLYLSNSISTTSPCSKSGRTNTSTFGGHDLVGGSGFHFTRGCKCGFSAVMNQKYVVNGNLFYEDEIEVTRLSVRSSLSQSNENLYTRPPNYRTRQGWWVTSSHPSVSHLLLLQRIMSSVFEEFSVRQITDQLRWNMLSCDQVIKENKLEYDNACALISSAIRNSVETVRPRRVVGHADNIDSITTDTPHSASETGAYIHPSFFLKAHSKMPQNQNDQIRLLTTMRPWLQEAISSTRMLESNYTVDGPLTWKAFHQLAGRGSDETCKPQPIPQLRVSSCDQENLLISPFALRDWDRLSLFPLSRPKRIAYAVILPSDSHMLSDSTSNIPNVLMSDGTDTNSFSLTSNSLRRNLVDFLKELSHTYEACHLGQHFPYYKPEAGXXXXXXXXXXXX
Length1542
PositionMiddle
OrganismSchistosoma rodhaini
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.08
Grand average of hydropathy-0.471
Instability index56.23
Isoelectric point6.79
Molecular weight169889.57
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08529
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1168.98|     291|     301|     591|     884|       1
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  199-  287 (35.26/ 9.58)	.........................................................................................................................................................................................................................................................................RV..GVEH................................IQSCIASQSTIPvilapyGISAKLTGFGFEKKDGDLMVESE.AWSTFYPL........KSSHECDPAmsGVTGLPFFAMATPTHQNPRQQ..NK
  303-  544 (326.26/161.71)	FPDTPPKFvevivdgfrmrypmcfvliTSVNDSPSQSDYNPTPYDEAiH.LSDV..........SGH.NLSTNVSAPYMS..NKCSMYNAHIP....NKMKTSRF..W...........RVNKRR.KR..........PSIKMNTP............GTSLLKSIIPSS.SL.QSDFLVD.VRH.......IYlagrtlqcasQHNRLPSMKPEWQSKRSRST.DKSDMS.CS.......TDGLTTSVSP.EMCSL..YIQDpCTI..LQCC................................CNRFSRVRRTSV......GGSFHQQDPFIRRSLKS.......................................SIHFNVPPC.DRPR.TPLSM
  591-  884 (495.20/257.50)	TSQTTPSS...................THLSTAPQPPSLLPKPESNS.D.LSSVV......KIPNGLVTTDSPVSSDHQT..QYAKMSARHIPIASVSVMKRDLFntW.LARHAAQELQKESSSDIKR..........PNLCLNIPDRIEREQCICPEGITLQSTIEQSSPSF.PNYSIVE.DNT.......LY..........KENNVTTDEYSFRNKRLRTAICRTDFNECS...LNDgAQGITTDITNVNFTSANSYSPD.MKV..GVTE................................CNGLIDDQHINP......GGSETNSHSGLMHSNGSIMNNSSGTFSRNVGLITHRGVSLASSTGSGPI..GPAELALMLPTPPSHDAPQPSPVDG
  889- 1185 (312.26/154.43)	TNRMNPST...................TSVST.PGPGS..PSVQTIQ.DsLSSSVtdtsshSIPVPFQSVNSPSSCQNQGlwHLAKLPCIQ.NLGSVSMESQD....WsFVQPCAAYLGMTSNYQIPHdeissfskslPQLKWSYDHRASNQKSVSSDCV.........DPHFtPNGLIVNtGNQsttskswLM..........SPN.......SFPPTSLHRNVTNTNNKPCSpqqLNE..SGTTCPITGF.VKSADCTNPN.TSYveDFTEwlsslletngllvnlilsdsmlnlfkdhnfdsCN..ICECTSSI......LGSEI....GLYLSN.SISTTSPCSKSGRTNTSTFGGHDLVGGSG...............................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     377.52|     120|    1220|      28|     170|       2
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   28-  170 (195.18/147.78)	FSGIQYRKYILHTPKEYHDPLNDP..IIKS.........YTLCQKYGVLSAW..VRSKPESSDLsnpcafskfakelwvFWygnddFPNADSCILPELR.RE..DHGNWRQgLSYEtrTVLFRALHNVVERCLLTKGFVRLGKWFVQPRKCGCNDDNVQ
 1196- 1331 (182.34/98.49)	FSAVMNQKYVVNGNLFYEDEIEVTrlSVRSslsqsnenlYTRPPNYRTRQGWwvTSSHPSVSHL...............LL.....LQRIMSSVFEEFSvRQitDQLRWNM.LSCD..QVIKENKLEYDNACALISSAIRNSVETVRPRRVVGHADNID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08529 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CNGLIDDQHINPGGSETNSHSGLMHSNGSIMNNSSGTFSRNVG
2) PIGPAELALMLPTPPSHDAPQPSPVDGVSVSTNRMNPSTTSVSTPGPGSPSVQTIQDSLSSSVTDTSSHSIPVPFQSV
3) RTPLSMITTNLTATHDPSMPTLSPQQPAPNQNSNLSSNTLNELNNDLACDQNTSQTTPSSTHLSTAPQPPSLLPKPESNSDLSSVVKIPNGLVTTDSPVSSDHQTQYAKMSA
799
858
539
841
935
650










Molecular Recognition Features






MoRF SequenceStartStop




1) KYRAVR
142
147