<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08526

Description Uncharacterized protein
SequenceMSSSNNNNDTLKRTKSIQLHDAYNQLTTGKKPYPPIFNTDGWNNQMLDDKALCSLAPLPAFSKFLKSVQELFCINSDEKLTSLTLTQFAQLTRLTFDKFKSGIISSKTFSPTNCRRTDPGSTLLESYLSTSLLFHAAILAIQSLDVSIRHVHNEIPYDQQQQTDEQQRIKNQHDLLENAVFMCVWPVSQLTVQLSMLCQPTTSNGMESFWWRLKLQLSQSVNSCDRWPPETLNVFEEFFDKRVCSFPFQPSAVTAFFRLLLLPPHALRAMGRVLAFDLHSPAQAPVYVRIGLIGMGVNSRVTAISSSSSLANQPPNGAASAATGAAQNLLTFDTGSDLQPGMPGIIVRPSKITLQLLITRSHSRHLSKNLTPLAQLVVVGYDWDVNHVVIYPTINQSQNIITNNRNQSDTINLNLLRLLHDTDVESKANAMATSSNDSALVQLVLLITQTVAASYPISSSDSTSLNNSNVMTGFGIGGGGGNVNSGAGIGSQQVLYG
Length497
PositionTail
OrganismSchistosoma rodhaini
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.07
Grand average of hydropathy-0.135
Instability index43.37
Isoelectric point7.66
Molecular weight54507.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08526
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.93|      17|      39|     176|     192|       2
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  176-  192 (32.35/17.28)	LENAVFMC.VWPVSQLTV
  217-  234 (28.58/14.59)	LSQSVNSCdRWPPETLNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.19|      33|     303|       2|      34|       5
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    2-   34 (58.92/35.47)	SSSNNNNDTLKRTKSIQLHDAYNQLT..TGKKPYP
  306-  340 (51.27/29.97)	SSSSLANQPPNGAASAATGAAQNLLTfdTGSDLQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.94|      18|     189|      49|      66|       6
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   49-   66 (32.39/19.44)	DKALCSLAPLP.AFSKFLK
  240-  258 (30.55/17.96)	DKRVCSFPFQPsAVTAFFR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08526 with Med14 domain of Kingdom Metazoa
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