<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08520

Description Uncharacterized protein
SequenceMSSFPSLEYRSLKRKEHCPPDVYCQRSEQKEDLMCEDFVKDGFKYTKPVRDEYESCKEESRFLNSDAVWSFYYNVMLKKYECSNFQDFKKRQTTNIRDTVIPAIDMYKEQVCDWFRELSSNVPLQNLGRRVPFFKDKEELLHELLSNKVPITRALWFINISVIQSTAVAETAKKKPRAPQDPTADWSSTLCRLLSRSLEPIYAPVKHNELISLFNDWDYLFSLLLAMYDSDMADHWEVILWLIKAAESVNEQIRGQSSPSTVALSPSDRSALTSKCASDFPLKFILHYLIKFGRRFTESELLIRRLLYWCCTTFADVVFACTGSKYAPSVGTFQSILNEYKDLYTCPLHQNISMSLSSLIVFIVLSCPSAAVWNPIPFDTDYAYFKGSPLDHIPHSLVALPLPLGEESTSIRKCLSEVEEDIIRRSQLVESGWLIEPCSGNNGENVSPSSFILIE
Length455
PositionKinase
OrganismSchistosoma mattheei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.11
Grand average of hydropathy-0.230
Instability index69.57
Isoelectric point5.56
Molecular weight52334.26
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08520
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.62|      27|     106|     281|     307|       1
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  281-  307 (46.29/29.04)	PLKFILHYLIKFGRRFTESELLIRRLL
  389-  415 (48.33/30.61)	PLDHIPHSLVALPLPLGEESTSIRKCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.37|      12|      47|     136|     151|       2
---------------------------------------------------------------------------
  113-  124 (23.62/12.75)	DWFRELSSN.VPL
  139-  151 (16.74/ 9.86)	ELLHELLSNkVPI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08520 with Med12 domain of Kingdom Metazoa
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