<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08517

Description Uncharacterized protein
SequenceMFASQPNIKPTHIPPIMECPPMPHPAMNVNFPTFYSGSFVQNNISSLAQESLYEIQRLRLLLTNLLTSIQSDEKDPEEKNKIVDENFMLFNRNGSTKCENIPSPLFTTGEGKTNGFVPECRNNLPQTIGTKNLSCEKLALHKIVNQISDVFINLDQLASRMQVNRLSGRPSDHGLQNALSLFNTVEQLEFSRNSWLYESSLSQYMGTDDHGKESDCRRVDWLMDRIEAERWSHRYWGRTRTVLEGLLACSAFRRSHLNTDHSRRRTDFLNIINRDYGADLEHLLNELNVNLPDLTITLIEPSSVVSVAHLRVGEIMQCFVTFRQLNPERIIVRGVSEPMIIKTHSDFPNNNLNIDEKPLSLATEELLSDSGLDSLPKIRDTVVSLLSSKLIRFCNIHQSKLDLFTPSRHPLFRRITSLAQCALLHFSNEYKPPSAIRGFCAWLHSYRDLFSAPCCRCGQLLGQNVELPLWRSYPQMRKDNSRSMEPQHEHCQAII
Length495
PositionTail
OrganismSchistosoma mattheei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.07
Grand average of hydropathy-0.403
Instability index50.35
Isoelectric point6.79
Molecular weight56705.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08517
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.42|      13|      17|     421|     433|       1
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  421-  433 (26.39/14.84)	CALLH.FSNEYKPP
  440-  453 (23.03/12.15)	CAWLHsYRDLFSAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.34|      39|      76|      89|     130|       2
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   89-  130 (62.22/55.14)	LFNRNGSTKCENIPSpLFTTGEG...KTNGFVPEcrNNLPQTIGT
  166-  207 (65.11/43.99)	LSGRPSDHGLQNALS.LFNTVEQlefSRNSWLYE..SSLSQYMGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08517 with Med27 domain of Kingdom Metazoa
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