<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08514

Description Uncharacterized protein
SequenceLRQELLIISPGPVRLADAPLCLYVPLLWPCSSHELLQVRIDPVQGFVCTSFPLLTSLDTEFGAIGSVVASVNFSPPEGASENFSRSSVINTLASLESAFNQSSCHRVRLVSATGALVQPHESDRICSIQSRSLRNLSHGDARWRSVICECLEHLRLCLGLARLMQTAKIHRPFWQPFKRHLPLILSPAQVNLSSLWSQMLVRLQQSYRWPILFAQLFPNNEYYIACEVISGPLNVDYKYYLIVCNALPEHMNITTNLQGVLVFNSEVNPASGHLNETGLFLQVTHFTSLIADTVWSNNPSTTLEQLCACIQKAQSTIVSQRSTRLNELLNKLKLSHAIDSESVYSDAAVTRKSVRLFEPQATVPTLARLIGTLEENILTNYLMVEIISDAKPRNNHNSSGSSNNNNNSCPVVNINFGMQLSCAGIEHNGMRYDGAGCLSAITITSIPFNPPSWHPPDIIPLVDFVHGMILRPHFDPFTHRRSWQLDIVFTGIVAPLNGINQTSSTYLRHQTAEWTVARLEHFNIVVQNILVEWENLCSMHALCYHVISNPNIYLPKGVQVYSYNLRTLSLIYGKYYLADISNPTGQKFTLSLGFRPISLSISNNTTRELNYDDTNMSNTINVDFNPHMIARQHLEELLNARKSIYFLATVSYYYDLFNTL
Length660
PositionTail
OrganismSchistosoma mattheei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.09
Grand average of hydropathy-0.018
Instability index49.22
Isoelectric point6.79
Molecular weight74193.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08514
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.18|      22|      28|       3|      27|       1
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    3-   27 (35.21/25.95)	QELLIISPGPVRladAPLCLYVPLL
   33-   54 (40.98/22.75)	HELLQVRIDPVQ...GFVCTSFPLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.46|      28|      28|     542|     569|       2
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  542-  569 (50.78/31.10)	LCYHVISNPNIYLPKGVQ.VYSYNLRTLS
  570-  598 (44.68/26.52)	LIYGKYYLADISNPTGQKfTLSLGFRPIS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.83|      11|      28|     448|     459|       3
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  448-  459 (21.21/14.68)	FNP....PSWHpPDII
  474-  488 (17.62/ 6.81)	FDPfthrRSWQ.LDIV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.43|      10|      29|     318|     327|       4
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  318-  327 (17.18/11.14)	VSQRSTRLNE
  349-  358 (16.25/10.15)	VTRKSVRLFE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.55|      10|      29|     153|     162|       5
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  153-  162 (18.83/ 9.21)	HLRLCLGLAR
  180-  189 (18.72/ 9.12)	HLPLILSPAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.98|      32|      35|      78|     110|       6
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   78-  110 (48.24/41.42)	GASENFSRSSVINTLASlESAFNQSSCH.RVRLV
  114-  146 (50.74/38.10)	GALVQPHESDRICSIQS.RSLRNLSHGDaRWRSV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.23|      17|      27|     203|     219|       7
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  203-  219 (31.44/17.22)	LQQSYRWPILFAQLFPN
  233-  249 (29.80/15.99)	LNVDYKYYLIVCNALPE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.01|      12|     157|     462|     473|       8
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  462-  473 (24.81/14.73)	VDFVHGMILRPH
  622-  633 (25.20/15.07)	VDFNPHMIARQH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.66|      14|      27|     268|     282|       9
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  268-  282 (21.32/19.63)	NPaSGHLNETGLFLQ
  298-  311 (26.34/18.73)	NP.STTLEQLCACIQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08514 with Med14 domain of Kingdom Metazoa
Unable to open file!