<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08510

Description Uncharacterized protein
SequenceMSRTSLAEAVYAWPCLLPPHFRSSTACWKRQGRLLHLATAPVCLWQHVLRKSRLGQDHLPRVMPPALRPIESRISRRMQALVQSVSSTQISNSSVNLISKLTWNQLFVVLNAFSTDNEVSQLIQRLIDTFWTNETAKDNQKLEHGVLWSRLIKNGKIDFPYDLSAYGRLQPLSHHLMRTMSVHVRMLVLHFFLQKFSVLPNSNMLSTPAVIETFCRILTCREVESNSVNRILCLLTKLQPLWSYNTSNMEPKYTILCSTTDPKVSNYFTCSLVYTLLDTLGFRLADILTPEVRIHTLTSLIGLMKLWSNWSTSVLDNKEPKNLCDGGINEIPIELQYLLDWNIIKFVRSIQAPDCVIYGFCSALTSSTLTQTQPGTNSLHSVNNSACVSQPQNSNIISQQGSGLMNNTTGGSVPINRPFIPVNTGVPTSIPSSSIIQPPIDPILSSNTGVNSLTSGSGSASFPNSIPGYPFLMCDNVEVNRFVLYSLLQMYHTFDLEEASGIRPNLVEQIRSMCEQCGPNSLIDLPQLITKRLPDFLILVIRQLTNPNTGEFNIGSLPSSDPMNVESIESTLPYTDKSTSLSKLCSMVQEEYTCFSNGNFEWSNTVSRSNVFLW
Length614
PositionTail
OrganismSchistosoma mattheei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.08
Grand average of hydropathy-0.064
Instability index47.57
Isoelectric point8.07
Molecular weight68797.26
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08510
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.83|      32|      68|     217|     257|       1
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  226-  257 (61.55/18.78)	NSVNRI..LCLLTKLQPLWS.YNTS....NMEPKYTILC
  290-  324 (42.31/13.08)	PEV.RIhtLTSLIGLMKLWSnWSTS.vldNKEPKN..LC
  438-  472 (44.97/24.98)	PPIDPI..LSSNTGVNSLTS.GSGSasfpNSIPGYPFL.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.33|      39|     143|     373|     435|       2
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  373-  414 (65.65/59.83)	QPGTNSLHSVNNSACVSQPQNSNIISQQgsgLMNNTTG....GSVP
  516-  558 (64.68/25.33)	QCGPNSLIDLPQLITKRLPDFLILVIRQ...LTNPNTGefniGSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.07|      16|     143|     115|     130|       3
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  115-  130 (28.28/18.51)	TDNEVS.....QLIQRLIDTF
  260-  280 (21.79/12.65)	TDPKVSnyftcSLVYTLLDTL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.11|      27|     143|     189|     219|       4
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  189-  219 (43.16/33.15)	LHFFLQ....KFSvlpnSNMLSTPAVIETFCRILT
  335-  365 (43.95/24.39)	LQYLLDwniiKFV....RSIQAPDCVIYGFCSALT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08510 with Med23 domain of Kingdom Metazoa
Unable to open file!