<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08509

Description Uncharacterized protein
SequenceMLNTLEFFRCVEPLRDQVLSCNGLKVSSSHIHCIQPVCGMLLIALSPSDLILIYRASLSLRITLNIIEHSTVSSAMSLSNNNNDALKTTKSIQLLDAYNQLTTGKKPYPPIFNTDGWNNQIIMPSKTFSLTNYRRTDPGPTLLESYLSTSLLFHAAILAIQSLDVSIHHVHNEIPYDLQQQQQTDEQQRIKNQHDLLENAVFICIWPVSQLTVQLSMLCQPTTNNGIESFWWRLKLQLSQSVNSCDRWPPETLSVFEEFFEKRVCSFPFQPSAVTAFFRLLLLPPHALRAMGRVLAFDLHSPAQAPVYVRIGLIGMGVNSRVTAISSSSSLTNQPTNTAASAATGAAQNLLTFDTGSDLQPGMPGIIVRPSKITLQLLIMRSHSRHLSKNLIPLAQLVVVGYDWDVNHVVIYPTINQSQNIMTNNRNQSDTIGLNLLRLLHDTDVESKANAMATSSNDSALVQLVLLITQTVAASYPISSADSTSLNNSNVMTGFGIGGSVNNGAGVGSQQALYG
Length515
PositionTail
OrganismSchistosoma mattheei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.07
Grand average of hydropathy0.015
Instability index45.93
Isoelectric point6.70
Molecular weight56599.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08509
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.41|      27|      61|     195|     221|       1
---------------------------------------------------------------------------
  195-  221 (49.68/30.23)	DL.LENAVFIC.IWPV..SQLTVQLSMLCQP
  235-  255 (17.28/ 6.21)	KLqLSQSVNSCdRWPP..ETLSV........
  258-  284 (37.45/21.16)	EF.FEKRV..C.SFPFqpSAVTAFFRLLLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.31|      23|     322|      34|      59|       4
---------------------------------------------------------------------------
   34-   59 (32.37/34.58)	IQPvcGMLLIALSPSDL...ILIYRaSLS
  359-  384 (38.94/26.80)	LQP..GMPGIIVRPSKItlqLLIMR.SHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.15|      25|     404|      60|      84|       7
---------------------------------------------------------------------------
   60-   84 (42.44/22.64)	LRITLNIIEHSTVSSAMSLSNNNND
  466-  490 (41.71/22.14)	LLITQTVAASYPISSADSTSLNNSN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08509 with Med14 domain of Kingdom Metazoa
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