<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08496

Description Uncharacterized protein
SequenceMDSRKHVPSGSEHDEERQQIRSRLRKSLRNDREQWWATKAKEMEKAATIGNTRQLYRLIKETGINKSSVSLLTKLQPLWSYNTSNMEPKYTVLCSTLDPKVSNYFTCSLVYTLLDTLGFRLADILTPEVRIHTLTSLIGLMKLWSNWSTSILDNKEPKNLCDGGTNEILIELQYLLDWNIIKFVRSIQAPDCVIYGFCSALTSSTLTQAQPGTNSLHSVNNSACVSQPQNSNIISQQGSGLMNNTTGGSVPINRPFIPVNTGVPTSIPSSSIIQPPIDPILSSNTGVNSLTSGSGSAGFPNSVPGYPFLMCDNVEVNRFVLYSLLQMYHTFDLEEASGIRPNLVEQIRSMCEQCGPNSLIDLPQLITKRLPDFLILVIRQLTNPNTGEFNIGSLPSLDPMNVESIESTLPYTDKSTSISKLCSMVQEEYTCFSSTFLLYSIQ
Length442
PositionTail
OrganismSchistosoma margrebowiei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.07
Grand average of hydropathy-0.202
Instability index45.26
Isoelectric point5.83
Molecular weight49144.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.40|      36|      37|     233|     268|       1
---------------------------------------------------------------------------
  193-  228 (57.97/28.04)	VIYGFCSALTSSTLT.QAQPGTNSLHSVNNSACVSQP
  233-  268 (61.78/30.31)	IISQQGSGLMNNTTG.GSVPINRPFIPVNTGVPTSIP
  272-  304 (47.65/21.90)	IIQPPIDPILSSNTGvNSLTSGSG....SAGFPNSVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.65|      19|      37|     121|     144|       2
---------------------------------------------------------------------------
  121-  144 (23.72/29.69)	LADILTPEVrihtLTSLIGLMKlW
  160-  178 (35.94/23.75)	LCDGGTNEI....LIELQYLLD.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.12|      16|      20|      71|      86|       3
---------------------------------------------------------------------------
   71-   86 (29.56/15.50)	LLTKLQP.LWSYNTSNM
   93-  109 (25.56/12.58)	LCSTLDPkVSNYFTCSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08496 with Med23 domain of Kingdom Metazoa
Unable to open file!