<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08489

Description Uncharacterized protein
SequenceLLTRTMVARAEQMLQDLRQELLIISPGPVRLADAPLCLYVPLLWPCSQHELLQVRIDPVHGFVCTSFPLLTSLDTEFGAIGSVVASVNFSPPTGASENFSRSSVINTLASLESAFNQSSCHRVRLVSATGALVQPHESDRICSIQSRSLRNLSHGDARWRSVICECLEHLRLCLGLARLMQTAKIHRPFWQPFKRHLPLILSPAQVNLSSLWSQMLVRLQQSYRWPILFAQLFPNNEYYIACEVISGPLNVDYKYYLIVCNALPEHMNITTNLQGVLVFNSEVNPASGHLNETGLFLQVTHFTSLVADTVWSNNPSTTLEQLCACIQKAQSTIVNQRSTRLNELLNKLKLSHTIDSESVYNDAAVVTRKSVRLFEPQATVPTLARLIGTLEENILTNYLMVEVSFFKGIIPFNPPSWHPSDIIPLVDFVHGMILRPHFDPFTHRRSWQLDIVFTGIVAPLNGINQMSSTYLRHQTAEWTVARLEHFNIVVQNILVEWENLCSMHALCYHVISNPNVYLPKGVQVYSYNLRTLSLIYGKYYLADISNPTGQKFTLSLGFRPISRNISNNTTRELNYDDTNMSNTINVDFNPHMIARQHLEELLNARKSIYFLSTTMLNTLEFFRCVEPLRDQVLSYNGLKVSSHIHCTQAVCGMLLIALSPSDLILIYRASLSLRITLNVNEHSIVSSAMSSSNNNNDTLKTAKSIQLLDAYNQLTTGKNPYPPIFNTDGWNNQMLDDKALCNLAPLPAFSKFLKSLQELFCINSDECVLVILRQVMLGGFGSVSPSFTVGDVTTELSVLQLTN
Length803
PositionTail
OrganismSchistosoma margrebowiei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.08
Grand average of hydropathy0.044
Instability index45.50
Isoelectric point6.97
Molecular weight90356.96
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08489
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.38|      24|      35|      61|      95|       1
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   70-   95 (36.48/46.22)	LTSLDTEFGAigSVVASVNFSPPTGA
  108-  131 (40.90/20.07)	LASLESAFNQ..SSCHRVRLVSATGA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.31|      21|      21|     261|     281|       2
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  261-  281 (36.75/23.62)	NALPEHMNITTNLQGVLVFNS
  284-  304 (37.55/24.29)	NPASGHLNETGLFLQVTHFTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.06|      21|      28|      18|      41|       3
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   18-   41 (33.33/23.09)	RQELLIISPGPVRladAPLCLYVP
   48-   68 (39.73/20.52)	QHELLQVRIDPVH...GFVCTSFP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.80|      11|      30|     333|     343|       5
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  333-  343 (18.92/ 9.44)	IVNQRSTRLNE
  365-  375 (16.88/ 7.74)	VVTRKSVRLFE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.86|      33|      34|     424|     456|       6
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  424-  456 (61.87/45.14)	PL..VDFVHGMILRPHFDPFTHRRSWQLDIVFTGI
  459-  493 (52.99/37.54)	PLngINQMSSTYLRHQTAEWTVARLEHFNIVVQNI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.17|      29|      32|     553|     584|      10
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  556-  584 (51.22/33.95)	LGFRP..ISR.NISN..NTTRELNYDDTNMSNTI
  586-  619 (35.95/15.57)	VDFNPhmIARqHLEEllNARKSIYFLSTTMLNTL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.85|      14|     106|     523|     536|      16
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  523-  536 (26.13/20.46)	QVYSYN.LRTLSLIY
  631-  645 (21.72/15.57)	QVLSYNgLKVSSHIH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08489 with Med14 domain of Kingdom Metazoa
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