<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08472

Description Uncharacterized protein
SequenceMPVPYPQHPIPIEALSEYDIREILLDGHEILENTTLIEINALVDVLSIIKEGKYLAINPVADDSQETNLSLYLSGKKRSIAAAADILMKGAERLRRRHSELIDARVRRLNSIVPPQFDSTHNSFHKALMHLRQEWRLKLHQNSILGDVSLRSVGSHFRESGNFEIRESDGFADSKSDVESQDDKCVDAVTGVMVRDYLSFIIFSQSMEALLNLSHGPGLLNVEFLESDINSLPTPLLEFIFHKQQISSCSRDPLPINQRQKLFKAQRLLACREILSLLSCEASTSKEYNHLTGSVAFATQDKIIATLFPGVQICLSFAVRPTVFGEDVLGDERPKLQDKKSDHTVSTMDYSNCINLQLHRMLAGQHRAVWPNLASLPQPTCGPVEIPLNYRSGGANGLHASKFSSLPYSTKFSGFSVAVASVSGFASQAASALCVIHATNRTNSNSAEKTNTFNQRSQPIFSGQDRLSLFTEWGHSLPGGACVPSVGFRHGVPNSADDSVPGTSDIAMLEYTLLSRGVDEDTMKTVLGTNPSLLSRTIAISRHHYLRDQVYSIISELSQCSPIKIIAHWDTFNSATETSVRLCFYCTDYDAYRSWLGVTITPNGLVVLYADPPRTYRLGMDLNRLKDVLSNQVLYTQMNYIDILAIKILGWVRLGNNPFSAVANPEEIGDGPVIVKMFASPSAKHLICLRASAVMDIRMFVSRCSPCDYQFTTDHKDIFSNQDFREVFLSRMYGKSLVSKVEALMTLLS
Length749
PositionHead
OrganismSchistosoma margrebowiei
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.08
Grand average of hydropathy-0.128
Instability index41.67
Isoelectric point6.37
Molecular weight83277.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08472
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     376.64|     133|     286|     215|     398|       1
---------------------------------------------------------------------------
    7-  100 (108.69/60.96)	QHPIPIEALSEYDIREILLDGHEIL.....ENTTLIEINALVDVLSIIKEGKYLAinpvaddSQETNLSLYLSGKKRSIAAAADILMKGAERLRRRHSE.................................................................
  251-  398 (208.67/258.54)	RDPLPINQRQKLFKAQRLLACREILsllscEASTSKEYNHLTGSVAFATQDKIIA.......TLFPGVQICLSFAVRPTVFGEDVLGDERPKLQDKKSDHTVST.MDYsncINLQLHRMLAgqhravWPNLASLP........QPTCGPVEIPLnYRSGGANGL
  618-  686 (59.29/25.78)	.....................................................................................LGMDLNRLKDVLSNQVLYTqMNY...IDILAIKILG......WVRLGNNPfsavanpeEIGDGPVIVKM.FASPSAKHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.14|      27|     141|     546|     572|       2
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  546-  572 (50.27/32.23)	LR.DQVYSIISELSQCSPIK...IIAHWDTF
  689-  719 (41.87/25.72)	LRaSAVMDIRMFVSRCSPCDyqfTTDHKDIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.68|      16|     274|     215|     237|       4
---------------------------------------------------------------------------
  215-  237 (25.62/26.67)	HG.........PGllnveflESDINSLPTPLL
  490-  514 (24.05/11.43)	HGvpnsaddsvPG.......TSDIAMLEYTLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08472 with Med17 domain of Kingdom Metazoa
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