<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08466

Description Uncharacterized protein
SequenceLQNLFYFTFLFKIIIFIDLTYSDACALISSAIRNSVETVRPRRVVGHVDNIDSIANGTPHPASETGAYIHPSFFLKAHSKMPQNQNDQIRLLTTMRPWLQEAISSTRMLESNYTVDGPLTWKAFHQLAGRGSDETCKPQPIPQLRVSSCDQENLLISPFALRDWDRLSLFPLSRPKRIAYAVILPSDSHILSDLTYSIPNVLMSEGTDANSSSTSNSLRRTLIDFLKELSHTYEACHLGQHFPYYKPEAGSPDTAFIPVFPNPERLSISESDNFVSIHPDLLKTLTEQLGNHSLCAESILRIIQNYACSSVNSAIAALKKHGVAVEFSSDTNLRSALFPPFESIKSEKPNVPVKISQDDMKLNIVNRLSVPSRMDSSCSVRYSNGDGSFTTSLDTSSWGAGSDVYLVIYILNPFCYVSN
Length419
PositionMiddle
OrganismSchistosoma curassoni
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Trematoda> Digenea> Strigeidida> Schistosomatoidea> Schistosomatidae> Schistosoma.
Aromaticity0.09
Grand average of hydropathy-0.170
Instability index50.95
Isoelectric point6.19
Molecular weight46693.35
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08466
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.24|      32|      76|     251|     283|       1
---------------------------------------------------------------------------
  251-  283 (54.49/31.12)	SPDTAF.IPVFPNPERLSiSESDNF.VSIHPDLLK
  328-  361 (47.75/23.33)	SSDTNLrSALFPPFESIK.SEKPNVpVKISQDDMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.30|      29|     174|      15|      43|       2
---------------------------------------------------------------------------
   15-   43 (51.13/31.13)	IFIDLTYSDACALISSAIR.NSVETVRP.RR
  190-  220 (42.17/24.54)	ILSDLTYSIPNVLMSEGTDaNSSSTSNSlRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08466 with Med13 domain of Kingdom Metazoa
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